Sample 3300029007

Overview

Basic Information
IMG/M Taxon OID	3300029007 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193672 \| Ga0169678
Sample Name	Human fecal microbial communities from infant at 12 months in Denmark - 38_12M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	78282356
Sequencing Scaffolds	5
Novel Protein Genes	10
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055715	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F078693	Metagenome	116	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F029444

Metagenome

188

F032312

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F055715

Metagenome

138

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F078693

Metagenome

116

F101357

Metagenome / Metatranscriptome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169678_100102	Not Available	85534	Open in IMG/M
Ga0169678_100302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	35897	Open in IMG/M
Ga0169678_100753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	14568	Open in IMG/M
Ga0169678_100767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14380	Open in IMG/M
Ga0169678_100869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12558	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169678_100102

Not Available

85534

Open in IMG/M

Ga0169678_100302

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

35897

Open in IMG/M

Ga0169678_100753

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

14568

Open in IMG/M

Ga0169678_100767

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

14380

Open in IMG/M

Ga0169678_100869

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

12558

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169678_100102	Ga0169678_10010218	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0169678_100102	Ga0169678_10010219	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169678_100102	Ga0169678_10010225	F044555	MKTITRITINQNGNQILTCKVCKDTNNILFMSNEGILELISGLNYMDNLPTVPDLEKPIEIQITSTREIPIEQNKRVQTKIKEIIYNNLYDTLVEELKDTISRFKAQYNIQEINPYISDILQNPEDLISRSNTK
Ga0169678_100102	Ga0169678_10010230	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKDAYHNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0169678_100102	Ga0169678_10010232	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0169678_100102	Ga0169678_10010234	F064817	MNIKNLFNRFSKSKESELRYSLNLIYLEDIRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169678_100302	Ga0169678_10030216	F029444	MEVSGQLTGFEREDLISWTASNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFGEPKKAAPFFNF
Ga0169678_100753	Ga0169678_10075314	F078693	MVLAPVRGGERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0169678_100767	Ga0169678_10076712	F055715	LTKANKFDKMNELLIERMAKKFERASKNKLKKFLTNERFCDKINELIRVGTAKILDN
Ga0169678_100869	Ga0169678_1008691	F078693	VRGAERFFIKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPEGEVETEK

Scaffold ID

Protein ID

Family

Sequence

Ga0169678_100102

Ga0169678_10010218

F032312

MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS

Ga0169678_100102

Ga0169678_10010219

F060985

MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD

Ga0169678_100102

Ga0169678_10010225

F044555

MKTITRITINQNGNQILTCKVCKDTNNILFMSNEGILELISGLNYMDNLPTVPDLEKPIEIQITSTREIPIEQNKRVQTKIKEIIYNNLYDTLVEELKDTISRFKAQYNIQEINPYISDILQNPEDLISRSNTK

Ga0169678_100102

Ga0169678_10010230

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKDAYHNYSNTSNIHYEGGKFPSMLTIQLFNLEF

Ga0169678_100102

Ga0169678_10010232

F105375

MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV

Ga0169678_100102

Ga0169678_10010234

F064817

MNIKNLFNRFSKSKESELRYSLNLIYLEDIRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKDLVPAHDISDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

Ga0169678_100302

Ga0169678_10030216

F029444

MEVSGQLTGFEREDLISWTASNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFGEPKKAAPFFNF

Ga0169678_100753

Ga0169678_10075314

F078693

MVLAPVRGGERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS

Ga0169678_100767

Ga0169678_10076712

F055715

LTKANKFDKMNELLIERMAKKFERASKNKLKKFLTNERFCDKINELIRVGTAKILDN

Ga0169678_100869

Ga0169678_1008691

F078693

VRGAERFFIKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPEGEVETEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029007: Human fecal microbial communities from infant at 12 months in Denmark - 38_12M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences