3300028967: Human fecal microbial communities from infant at 12 months in Denmark - 640_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300028967
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193852 | Ga0169865
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 640_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60611855
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F067720	Metagenome	125	Y
F078693	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169865_100609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13147
Ga0169865_102484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2992
Ga0169865_104134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1754

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169865_100609	Ga0169865_1006098	F067720	MSSTTYGHIGDLTDMFAVQEQFRHATKMVCDFVDLNKIDHFAVIGNMVRNAGQLPQPFWVGVACGGGSRSAARCAART
Ga0169865_102484	Ga0169865_1024844	F029444	MEVSGQLTGFEREALMSWTVSNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0169865_104134	Ga0169865_1041343	F078693	MVLAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS