3300028964: Human fecal microbial communities from infant at 12 months in Denmark - 45_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300028964
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193700 | Ga0169706
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 45_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 77363924
• Sequencing Scaffolds: 3
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F055775	Metagenome	138	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169706_100032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	186802
Ga0169706_100126	Not Available	82751
Ga0169706_100265	Not Available	44976

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169706_100032	Ga0169706_100032177	F059106	VILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0169706_100126	Ga0169706_10012622	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLEHSGTAMGMCNIFNSQDHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRISGYWFPYYKKYIPHRIKILKLALKDLERIKEEYGKD
Ga0169706_100126	Ga0169706_10012623	F080163	MKTIKFLQESFETKERFQQEISIKYFYNLDIVESIDFRINQRNIRYFYEAMQNFENFLVNEFKEKKTNFCSANQFLESINDFDKILFVIINYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKFESQVLDSENELLQEKLDLIREELYKIMGIDPDLQKKGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0169706_100126	Ga0169706_10012627	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLDKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEIDPYLQDILQNPENLVSLSQHHKR
Ga0169706_100126	Ga0169706_10012629	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKGDFHNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0169706_100126	Ga0169706_10012632	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFTMNFTDGEANIKSINRISSNIMQITFTV
Ga0169706_100126	Ga0169706_10012634	F064817	MNIKNLFNRFRKQEPELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITEVFTDIWYKCQGYMDTDHIGLEEILELMQYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDE
Ga0169706_100265	Ga0169706_1002655	F055775	MAQIAQQDNLVIEVATTAAALDGGTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIALN