Sample 3300028911

Overview

Basic Information
IMG/M Taxon OID	3300028911 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193019 \| Ga0168754
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012252-108
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	119457281
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F044554	Metagenome	154	N
F055715	Metagenome	138	N
F059106	Metagenome	134	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F073656	Metagenome	120	N
F084124	Metagenome	112	Y
F087335	Metagenome	110	N
F101356	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F044554

Metagenome

154

F055715

Metagenome

138

F059106

Metagenome

134

F062845

Metagenome

130

F067844

Metagenome

125

F073656

Metagenome

120

F084124

Metagenome

112

F087335

Metagenome

110

F101356

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168754_100040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	137122	Open in IMG/M
Ga0168754_100274	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	43973	Open in IMG/M
Ga0168754_100297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	41009	Open in IMG/M
Ga0168754_100390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	32093	Open in IMG/M
Ga0168754_103367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	5698	Open in IMG/M
Ga0168754_104127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4809	Open in IMG/M
Ga0168754_108113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2694	Open in IMG/M
Ga0168754_109997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2200	Open in IMG/M
Ga0168754_118392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	1149	Open in IMG/M
Ga0168754_130804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	626	Open in IMG/M
Ga0168754_131205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	617	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168754_100040

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

137122

Open in IMG/M

Ga0168754_100274

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes

43973

Open in IMG/M

Ga0168754_100297

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

41009

Open in IMG/M

Ga0168754_100390

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii

32093

Open in IMG/M

Ga0168754_103367

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

5698

Open in IMG/M

Ga0168754_104127

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

4809

Open in IMG/M

Ga0168754_108113

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

2694

Open in IMG/M

Ga0168754_109997

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

2200

Open in IMG/M

Ga0168754_118392

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae

1149

Open in IMG/M

Ga0168754_130804

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

626

Open in IMG/M

Ga0168754_131205

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium

617

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168754_100040	Ga0168754_10004035	F084124	LNTTAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF
Ga0168754_100274	Ga0168754_10027424	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
Ga0168754_100297	Ga0168754_10029750	F084124	LLFGGLNKQAKAFARATKENTLHFYSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLL
Ga0168754_100390	Ga0168754_10039010	F084124	LLFGGLNKQVKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSLSTQTAWLFATEELLYRKILWALPKPASL
Ga0168754_103367	Ga0168754_1033675	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0168754_104127	Ga0168754_1041275	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0168754_108113	Ga0168754_1081133	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT
Ga0168754_109997	Ga0168754_1099972	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRANFAQALFSSLFFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168754_117852	Ga0168754_1178521	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0168754_118392	Ga0168754_1183923	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP
Ga0168754_130804	Ga0168754_1308042	F055715	LTKANEFDRMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN
Ga0168754_131205	Ga0168754_1312051	F059106	WKIRGILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVNA

Scaffold ID

Protein ID

Family

Sequence

Ga0168754_100040

Ga0168754_10004035

F084124

LNTTAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF

Ga0168754_100274

Ga0168754_10027424

F073656

MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH

Ga0168754_100297

Ga0168754_10029750

F084124

LLFGGLNKQAKAFARATKENTLHFYSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLL

Ga0168754_100390

Ga0168754_10039010

F084124

LLFGGLNKQVKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSLSTQTAWLFATEELLYRKILWALPKPASL

Ga0168754_103367

Ga0168754_1033675

F087335

MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD

Ga0168754_104127

Ga0168754_1041275

F026489

MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF

Ga0168754_108113

Ga0168754_1081133

F062845

MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT

Ga0168754_109997

Ga0168754_1099972

F044554

VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRANFAQALFSSLFFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL

Ga0168754_117852

Ga0168754_1178521

F101356

VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ

Ga0168754_118392

Ga0168754_1183923

F067844

MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP

Ga0168754_130804

Ga0168754_1308042

F055715

LTKANEFDRMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN

Ga0168754_131205

Ga0168754_1312051

F059106

WKIRGILLQIFVWIVDLKVKERLTEHLKKDTKYRRVTIGVNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028911: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012252-108

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences