| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028852 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321320 | Ga0307333 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 64818802 |
| Sequencing Scaffolds | 31 |
| Novel Protein Genes | 35 |
| Associated Families | 27 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| Not Available | 19 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012026 | Metagenome / Metatranscriptome | 284 | Y |
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F021795 | Metagenome / Metatranscriptome | 217 | Y |
| F022205 | Metatranscriptome | 215 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F047076 | Metagenome / Metatranscriptome | 150 | N |
| F051952 | Metatranscriptome | 143 | N |
| F054063 | Metagenome / Metatranscriptome | 140 | N |
| F054902 | Metagenome / Metatranscriptome | 139 | N |
| F061655 | Metagenome / Metatranscriptome | 131 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F072475 | Metagenome / Metatranscriptome | 121 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F088944 | Metagenome / Metatranscriptome | 109 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F095523 | Metagenome / Metatranscriptome | 105 | N |
| F098317 | Metagenome / Metatranscriptome | 104 | Y |
| F101222 | Metagenome / Metatranscriptome | 102 | N |
| F101223 | Metagenome / Metatranscriptome | 102 | N |
| F103315 | Metagenome / Metatranscriptome | 101 | N |
| F105253 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307333_101774 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 2621 | Open in IMG/M |
| Ga0307333_102846 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 2178 | Open in IMG/M |
| Ga0307333_104279 | Not Available | 1819 | Open in IMG/M |
| Ga0307333_104912 | Not Available | 1705 | Open in IMG/M |
| Ga0307333_110733 | Not Available | 1157 | Open in IMG/M |
| Ga0307333_111052 | Not Available | 1140 | Open in IMG/M |
| Ga0307333_113711 | Not Available | 1011 | Open in IMG/M |
| Ga0307333_114390 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 983 | Open in IMG/M |
| Ga0307333_115585 | Not Available | 940 | Open in IMG/M |
| Ga0307333_115742 | All Organisms → Viruses → environmental samples → uncultured virus | 934 | Open in IMG/M |
| Ga0307333_117440 | Not Available | 879 | Open in IMG/M |
| Ga0307333_117469 | Not Available | 879 | Open in IMG/M |
| Ga0307333_118114 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 860 | Open in IMG/M |
| Ga0307333_118164 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 858 | Open in IMG/M |
| Ga0307333_119691 | All Organisms → cellular organisms → Bacteria | 818 | Open in IMG/M |
| Ga0307333_120445 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 799 | Open in IMG/M |
| Ga0307333_120496 | Not Available | 798 | Open in IMG/M |
| Ga0307333_120641 | Not Available | 794 | Open in IMG/M |
| Ga0307333_121534 | Not Available | 775 | Open in IMG/M |
| Ga0307333_122963 | Not Available | 745 | Open in IMG/M |
| Ga0307333_123465 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 735 | Open in IMG/M |
| Ga0307333_131478 | Not Available | 614 | Open in IMG/M |
| Ga0307333_131511 | Not Available | 614 | Open in IMG/M |
| Ga0307333_131941 | Not Available | 609 | Open in IMG/M |
| Ga0307333_132819 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 599 | Open in IMG/M |
| Ga0307333_137729 | Not Available | 549 | Open in IMG/M |
| Ga0307333_138197 | Not Available | 546 | Open in IMG/M |
| Ga0307333_139443 | Not Available | 535 | Open in IMG/M |
| Ga0307333_140416 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium | 527 | Open in IMG/M |
| Ga0307333_142517 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 511 | Open in IMG/M |
| Ga0307333_143240 | Not Available | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307333_101774 | Ga0307333_1017741 | F031111 | SRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP |
| Ga0307333_102846 | Ga0307333_1028463 | F094051 | MGNTGILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNL |
| Ga0307333_104279 | Ga0307333_1042792 | F067770 | MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKKANR |
| Ga0307333_104912 | Ga0307333_1049123 | F047076 | ELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNNVNQYEDLNNFWKLDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETIGNHNLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF |
| Ga0307333_108879 | Ga0307333_1088792 | F020914 | MAIYQKYGFAIDQILSEDQALPNAKPGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSADESAEKVEAFSVRR |
| Ga0307333_109504 | Ga0307333_1095042 | F020914 | MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLKLTY |
| Ga0307333_110733 | Ga0307333_1107333 | F070167 | MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSPAGLLKHLGL |
| Ga0307333_111052 | Ga0307333_1110522 | F051952 | YTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSS |
| Ga0307333_113711 | Ga0307333_1137111 | F062800 | MNQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV |
| Ga0307333_114390 | Ga0307333_1143902 | F070158 | SSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVTRLKEEYRKKGLSVY |
| Ga0307333_115585 | Ga0307333_1155853 | F072475 | AMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESIAEHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP |
| Ga0307333_115742 | Ga0307333_1157421 | F017318 | PLKFQRTVEGAFDINCDGINPSVGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK |
| Ga0307333_117440 | Ga0307333_1174401 | F062800 | STKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307333_117469 | Ga0307333_1174692 | F101223 | MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESEGENCCSCESENADTENPAKYIIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTLDYVIKQAQEAQAKEKAMKAE |
| Ga0307333_118114 | Ga0307333_1181141 | F031111 | SRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL |
| Ga0307333_118164 | Ga0307333_1181641 | F088944 | LEDRFDFDEGKEKIESLTTEAGKANIIVEQNNIEPIETQVLGTIRQLSHSGKLINYVPVALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFLLYTEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRLRDQDANALDLTPMVDLLVKKEGLAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISI |
| Ga0307333_119691 | Ga0307333_1196911 | F012026 | QISVLIGKRADAINVLHRLEKVDDRYNPKIIAEINGYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMEKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD |
| Ga0307333_120445 | Ga0307333_1204452 | F054063 | LKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTVAIKPFIESWNDLGMEFQKGLSPYNTAKMFVDALVKAEFLNNTGFEMNGDDNNFTFKAIECPYKSHCTRLVTEGKEIACLRAITLLGAMEFNKEGESLKYLYKFDFNKESPCLVSFEKFKD |
| Ga0307333_120496 | Ga0307333_1204961 | F025291 | MVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKATQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307333_120641 | Ga0307333_1206411 | F098317 | VDKGSVSEMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF |
| Ga0307333_121534 | Ga0307333_1215341 | F070165 | MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307333_122963 | Ga0307333_1229631 | F025291 | YNYHLGDNSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK |
| Ga0307333_123465 | Ga0307333_1234652 | F077342 | MARTLNEFVSSTGNYVYEITDAEMAGVDLSDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF |
| Ga0307333_131478 | Ga0307333_1314781 | F070165 | LGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307333_131511 | Ga0307333_1315112 | F101222 | MNVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELEGKMSDIMECSVQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEIKDGKYTK |
| Ga0307333_131941 | Ga0307333_1319412 | F054902 | MRIKIQKKWYNVKSTWAELTIADAQKLAEHEPPAEYLKYLKNEVDGLSPDIEMQVLAWVGEILPIISDMPTEVIESLMPTDRWVILKSLMHIVSGVYLQIPYDLPYDMPPAIILAEGKLYHVPTVRRVYNKDIYFSVVGFKTFSELLELQQLSDNIVK |
| Ga0307333_132819 | Ga0307333_1328191 | F095523 | ARKKEIPLLRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLSSPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNATDLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQK |
| Ga0307333_137729 | Ga0307333_1377291 | F047076 | MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLITTVLKPTSVSQYRDLLEQKAVKIDSVKDNSGDDIYWEVRHRKLLIYDSNKELITNETVGNHNLEIEYWESISGAIKPFPTDTGIEIDPNAIEEWNKSIPSISDVEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQA |
| Ga0307333_138005 | Ga0307333_1380051 | F105253 | LLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDYNYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIQLLEEYE |
| Ga0307333_138197 | Ga0307333_1381971 | F022205 | TMRHRNKRFLLPYNKFLDTQENTSKITAGSFGFPLTRPMRPHALEVRYARSTPGGIRFRVYAGNSEEVYQSPALVGGPAPQLFRVTLPANTDFSLYDGSQTVIEFGGAATYAIRLIMAHKENTA |
| Ga0307333_139443 | Ga0307333_1394431 | F103315 | LWSEVPSMITVEIYIFLAAVVAAAFIYIFLDLDNRLYGNLFAAGFAGIMSGLLALWSFNENTVTITTVPQTAIAVQHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEIMHESRMPDDEEAYE |
| Ga0307333_140416 | Ga0307333_1404161 | F031111 | KKEKSRFLIGKERCISNIPQNSYYQTIVNNPAAYNFSCYYPQNLPSSQIGKQVKEISKPLNLALIKLFKPKLTL |
| Ga0307333_142517 | Ga0307333_1425171 | F021795 | MKKEADRVRRWREKQKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALTSLKRQAYAPPVLRHFPRREEALARAAASPLPPAAPSAGRVGHEGNRQPRILIDDLANYPSLEDIEREQAAKEQSG |
| Ga0307333_143240 | Ga0307333_1432401 | F070165 | TSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV |
| Ga0307333_143789 | Ga0307333_1437891 | F061655 | MYNKAVLLQEVQQQELIMIDTLKLMLNEYQITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISRVDTFKNI |
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