NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300028852

3300028852: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028852 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0116197 | Gp0321320 | Ga0307333
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size64818802
Sequencing Scaffolds31
Novel Protein Genes35
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1
Not Available19
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA1041
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0091
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0381

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012026Metagenome / Metatranscriptome284Y
F017318Metagenome / Metatranscriptome241Y
F020914Metagenome / Metatranscriptome221N
F021795Metagenome / Metatranscriptome217Y
F022205Metatranscriptome215Y
F025291Metagenome / Metatranscriptome202N
F031111Metagenome / Metatranscriptome183N
F047076Metagenome / Metatranscriptome150N
F051952Metatranscriptome143N
F054063Metagenome / Metatranscriptome140N
F054902Metagenome / Metatranscriptome139N
F061655Metagenome / Metatranscriptome131Y
F062800Metagenome / Metatranscriptome130N
F067770Metagenome / Metatranscriptome125N
F070158Metagenome / Metatranscriptome123N
F070165Metagenome / Metatranscriptome123N
F070167Metagenome / Metatranscriptome123N
F072475Metagenome / Metatranscriptome121N
F077342Metagenome / Metatranscriptome117N
F088944Metagenome / Metatranscriptome109N
F094051Metagenome / Metatranscriptome106N
F095523Metagenome / Metatranscriptome105N
F098317Metagenome / Metatranscriptome104Y
F101222Metagenome / Metatranscriptome102N
F101223Metagenome / Metatranscriptome102N
F103315Metagenome / Metatranscriptome101N
F105253Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307333_101774All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes2621Open in IMG/M
Ga0307333_102846All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2178Open in IMG/M
Ga0307333_104279Not Available1819Open in IMG/M
Ga0307333_104912Not Available1705Open in IMG/M
Ga0307333_110733Not Available1157Open in IMG/M
Ga0307333_111052Not Available1140Open in IMG/M
Ga0307333_113711Not Available1011Open in IMG/M
Ga0307333_114390All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104983Open in IMG/M
Ga0307333_115585Not Available940Open in IMG/M
Ga0307333_115742All Organisms → Viruses → environmental samples → uncultured virus934Open in IMG/M
Ga0307333_117440Not Available879Open in IMG/M
Ga0307333_117469Not Available879Open in IMG/M
Ga0307333_118114All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes860Open in IMG/M
Ga0307333_118164All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes858Open in IMG/M
Ga0307333_119691All Organisms → cellular organisms → Bacteria818Open in IMG/M
Ga0307333_120445All Organisms → cellular organisms → Archaea → Euryarchaeota799Open in IMG/M
Ga0307333_120496Not Available798Open in IMG/M
Ga0307333_120641Not Available794Open in IMG/M
Ga0307333_121534Not Available775Open in IMG/M
Ga0307333_122963Not Available745Open in IMG/M
Ga0307333_123465All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003735Open in IMG/M
Ga0307333_131478Not Available614Open in IMG/M
Ga0307333_131511Not Available614Open in IMG/M
Ga0307333_131941Not Available609Open in IMG/M
Ga0307333_132819All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009599Open in IMG/M
Ga0307333_137729Not Available549Open in IMG/M
Ga0307333_138197Not Available546Open in IMG/M
Ga0307333_139443Not Available535Open in IMG/M
Ga0307333_140416All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium527Open in IMG/M
Ga0307333_142517All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038511Open in IMG/M
Ga0307333_143240Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307333_101774Ga0307333_1017741F031111SRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP
Ga0307333_102846Ga0307333_1028463F094051MGNTGILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNL
Ga0307333_104279Ga0307333_1042792F067770MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKKANR
Ga0307333_104912Ga0307333_1049123F047076ELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNNVNQYEDLNNFWKLDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETIGNHNLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0307333_108879Ga0307333_1088792F020914MAIYQKYGFAIDQILSEDQALPNAKPGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSADESAEKVEAFSVRR
Ga0307333_109504Ga0307333_1095042F020914MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLKLTY
Ga0307333_110733Ga0307333_1107333F070167MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSPAGLLKHLGL
Ga0307333_111052Ga0307333_1110522F051952YTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSS
Ga0307333_113711Ga0307333_1137111F062800MNQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV
Ga0307333_114390Ga0307333_1143902F070158SSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVTRLKEEYRKKGLSVY
Ga0307333_115585Ga0307333_1155853F072475AMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESIAEHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP
Ga0307333_115742Ga0307333_1157421F017318PLKFQRTVEGAFDINCDGINPSVGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK
Ga0307333_117440Ga0307333_1174401F062800STKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307333_117469Ga0307333_1174692F101223MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESEGENCCSCESENADTENPAKYIIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTLDYVIKQAQEAQAKEKAMKAE
Ga0307333_118114Ga0307333_1181141F031111SRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL
Ga0307333_118164Ga0307333_1181641F088944LEDRFDFDEGKEKIESLTTEAGKANIIVEQNNIEPIETQVLGTIRQLSHSGKLINYVPVALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFLLYTEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRLRDQDANALDLTPMVDLLVKKEGLAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISI
Ga0307333_119691Ga0307333_1196911F012026QISVLIGKRADAINVLHRLEKVDDRYNPKIIAEINGYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMEKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307333_120445Ga0307333_1204452F054063LKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTVAIKPFIESWNDLGMEFQKGLSPYNTAKMFVDALVKAEFLNNTGFEMNGDDNNFTFKAIECPYKSHCTRLVTEGKEIACLRAITLLGAMEFNKEGESLKYLYKFDFNKESPCLVSFEKFKD
Ga0307333_120496Ga0307333_1204961F025291MVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKATQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307333_120641Ga0307333_1206411F098317VDKGSVSEMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF
Ga0307333_121534Ga0307333_1215341F070165MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307333_122963Ga0307333_1229631F025291YNYHLGDNSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307333_123465Ga0307333_1234652F077342MARTLNEFVSSTGNYVYEITDAEMAGVDLSDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF
Ga0307333_131478Ga0307333_1314781F070165LGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307333_131511Ga0307333_1315112F101222MNVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELEGKMSDIMECSVQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEIKDGKYTK
Ga0307333_131941Ga0307333_1319412F054902MRIKIQKKWYNVKSTWAELTIADAQKLAEHEPPAEYLKYLKNEVDGLSPDIEMQVLAWVGEILPIISDMPTEVIESLMPTDRWVILKSLMHIVSGVYLQIPYDLPYDMPPAIILAEGKLYHVPTVRRVYNKDIYFSVVGFKTFSELLELQQLSDNIVK
Ga0307333_132819Ga0307333_1328191F095523ARKKEIPLLRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLSSPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNATDLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQK
Ga0307333_137729Ga0307333_1377291F047076MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLITTVLKPTSVSQYRDLLEQKAVKIDSVKDNSGDDIYWEVRHRKLLIYDSNKELITNETVGNHNLEIEYWESISGAIKPFPTDTGIEIDPNAIEEWNKSIPSISDVEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQA
Ga0307333_138005Ga0307333_1380051F105253LLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDYNYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIQLLEEYE
Ga0307333_138197Ga0307333_1381971F022205TMRHRNKRFLLPYNKFLDTQENTSKITAGSFGFPLTRPMRPHALEVRYARSTPGGIRFRVYAGNSEEVYQSPALVGGPAPQLFRVTLPANTDFSLYDGSQTVIEFGGAATYAIRLIMAHKENTA
Ga0307333_139443Ga0307333_1394431F103315LWSEVPSMITVEIYIFLAAVVAAAFIYIFLDLDNRLYGNLFAAGFAGIMSGLLALWSFNENTVTITTVPQTAIAVQHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEIMHESRMPDDEEAYE
Ga0307333_140416Ga0307333_1404161F031111KKEKSRFLIGKERCISNIPQNSYYQTIVNNPAAYNFSCYYPQNLPSSQIGKQVKEISKPLNLALIKLFKPKLTL
Ga0307333_142517Ga0307333_1425171F021795MKKEADRVRRWREKQKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALTSLKRQAYAPPVLRHFPRREEALARAAASPLPPAAPSAGRVGHEGNRQPRILIDDLANYPSLEDIEREQAAKEQSG
Ga0307333_143240Ga0307333_1432401F070165TSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307333_143789Ga0307333_1437891F061655MYNKAVLLQEVQQQELIMIDTLKLMLNEYQITDDSEIRVQPASYELGTGSKVEYPLFQTPSHGSHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGNNFYSVGEQGTEAVLSKVEGELKERGVHTNLKEADISRVDTFKNI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.