3300028758: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Gln1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028758
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321351 | Ga0307364
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Gln1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 63789084
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029768	Metagenome / Metatranscriptome	187	N
F033058	Metagenome / Metatranscriptome	178	Y
F048337	Metagenome / Metatranscriptome	148	N
F070158	Metagenome / Metatranscriptome	123	N
F082739	Metagenome / Metatranscriptome	113	N
F092121	Metagenome / Metatranscriptome	107	N
F092888	Metagenome / Metatranscriptome	107	Y
F097412	Metagenome / Metatranscriptome	104	N
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307364_111209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166
Ga0307364_116467	Not Available	923
Ga0307364_119683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822
Ga0307364_119816	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	818
Ga0307364_121303	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	782
Ga0307364_135836	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	555
Ga0307364_137363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	539
Ga0307364_140918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307364_110376	Ga0307364_1103761	F105254	KLERGKKLMAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDNPTNGHPYYKDEPEKVRDFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKSPKSVIVTYNIF
Ga0307364_111209	Ga0307364_1112092	F097412	MSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKFNRPSYQFAVTGDDPKVPLVWSVSAKGALQQIIGIMKANGLTTLVGGVLQVAVAGDGTERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307364_116467	Ga0307364_1164672	F033058	VETRRASHKRVCTWFVGRWRNHQPKRAEKPHSKSCDRKAQDGPAMRPETPLAVENGVGKPAAPEAPNVGTGKRAWRTPI
Ga0307364_119683	Ga0307364_1196831	F048337	MIEKQVIFEGILREEEEQSNETARLQDYRIAAITKDATYVLIDALPYDFIVTNVFYRITEAFDGTIDLGTKVAPGRIIADADFVKTVAKRSVAKSIQLDAGKPIQLVLGPGTT
Ga0307364_119816	Ga0307364_1198161	F070158	YFVKCMEAQNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVTRLKEEYRKKGLSIY
Ga0307364_120149	Ga0307364_1201491	F105254	ATIYRLYGAGGTKHSLAGKTGRFCTQDSDPGLNNPCKVPPTGEVYYSYRVTDCIGITGDFNQVRDIYIHCDGNFASEWGLDAGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQAGGTPGTTGHSIDDSSNGHPYYKDETEKVRNFDLCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKTPKSVIVTYNIF
Ga0307364_121303	Ga0307364_1213032	F092888	MPGPASARGNYGMQPRNNKAIPTTSEGSQVHEQGKLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSIILIQAMATGQTAWNHAAFEPASSLVLAAVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRD
Ga0307364_135836	Ga0307364_1358361	F082739	LLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGTQFNIHPAKLCGGVDIIRVDAGGYVTELSGTDQVVSAAVDNDANTVSLEIALDEPLATDEELMIYLKFQTALKKMLPD
Ga0307364_137363	Ga0307364_1373631	F092121	MPKHFYTLLIIPHKKKDSVKRFLATPRHFRLATVVSVVLFCFFGYCAIDYLSIKLEQWELANLRQLASTQQEQIDTLEEKISFFERKLADLKQVDEKIRSMASDLTGKSRKASKKEATAVREQA
Ga0307364_140918	Ga0307364_1409181	F029768	GGKAMTDTMTETAVAVNALYSEQELKKDSQVSVRLESGLFEALETQTQMWGFKSISQTVRAILTFYFLPVAYELELKNRSISEHKEFLKEKQAEGFSLEQARANYFTFQVVEYLEFLEQAMVMARHSLKFMESTSDKMNGILKETVNKIEQAMKELEQVAE