Sample 3300028753

Basic Information
IMG/M Taxon OID	3300028753 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321323 \| Ga0307336
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	47700245
Sequencing Scaffolds	29
Novel Protein Genes	31
Associated Families	27

Dataset Contents

Total Genome Size

47700245

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F020363	Metagenome / Metatranscriptome	224	Y
F021262	Metagenome / Metatranscriptome	219	N
F025291	Metagenome / Metatranscriptome	202	N
F028541	Metagenome / Metatranscriptome	191	Y
F029768	Metagenome / Metatranscriptome	187	N
F031111	Metagenome / Metatranscriptome	183	N
F035785	Metagenome / Metatranscriptome	171	Y
F047076	Metagenome / Metatranscriptome	150	N
F051952	Metatranscriptome	143	N
F052016	Metagenome / Metatranscriptome	143	N
F059033	Metagenome / Metatranscriptome	134	N
F067770	Metagenome / Metatranscriptome	125	N
F067893	Metagenome / Metatranscriptome	125	Y
F068879	Metagenome / Metatranscriptome	124	N
F070165	Metagenome / Metatranscriptome	123	N
F070167	Metagenome / Metatranscriptome	123	N
F074913	Metagenome / Metatranscriptome	119	Y
F077342	Metagenome / Metatranscriptome	117	N
F081379	Metagenome / Metatranscriptome	114	N
F093911	Metagenome / Metatranscriptome	106	N
F095527	Metagenome / Metatranscriptome	105	N
F098317	Metagenome / Metatranscriptome	104	Y
F099361	Metagenome / Metatranscriptome	103	Y
F101223	Metagenome / Metatranscriptome	102	N
F103196	Metagenome / Metatranscriptome	101	N
F103316	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307336_101110	Not Available	2842	Open in IMG/M
Ga0307336_101359	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	2622	Open in IMG/M
Ga0307336_102169	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	2140	Open in IMG/M
Ga0307336_103219	All Organisms → cellular organisms → Archaea → Euryarchaeota	1790	Open in IMG/M
Ga0307336_104567	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1504	Open in IMG/M
Ga0307336_106281	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1278	Open in IMG/M
Ga0307336_107322	Not Available	1175	Open in IMG/M
Ga0307336_107752	Not Available	1140	Open in IMG/M
Ga0307336_108572	All Organisms → Viruses → Predicted Viral	1079	Open in IMG/M
Ga0307336_109972	Not Available	991	Open in IMG/M
Ga0307336_110555	Not Available	961	Open in IMG/M
Ga0307336_113031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	851	Open in IMG/M
Ga0307336_117139	Not Available	720	Open in IMG/M
Ga0307336_118029	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	699	Open in IMG/M
Ga0307336_118162	Not Available	695	Open in IMG/M
Ga0307336_119069	Not Available	675	Open in IMG/M
Ga0307336_119214	Not Available	672	Open in IMG/M
Ga0307336_120528	Not Available	646	Open in IMG/M
Ga0307336_122752	Not Available	607	Open in IMG/M
Ga0307336_124249	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231	584	Open in IMG/M
Ga0307336_124554	Not Available	580	Open in IMG/M
Ga0307336_127111	Not Available	547	Open in IMG/M
Ga0307336_129031	Not Available	526	Open in IMG/M
Ga0307336_129144	Not Available	525	Open in IMG/M
Ga0307336_129625	Not Available	519	Open in IMG/M
Ga0307336_129851	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	517	Open in IMG/M
Ga0307336_130678	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	510	Open in IMG/M
Ga0307336_131152	Not Available	505	Open in IMG/M
Ga0307336_131203	Not Available	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307336_101110	Ga0307336_1011103	F047076	MTNGELYALAQLIIPELTAKAFVQFYNIAFEKISREVRLITTVLKPTSVSQYRDLLEQNAVKIDSVKDTSGDDIYWEVKHRKLLIYDSNRELITNETVGNHNLEIEYWESISGAIKPFPTDTVIENDPNAIEDWNKLIPDISDVEVQLCALYLMITELAVIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0307336_101359	Ga0307336_1013592	F081379	MKLTTLGAADALGTPIPVFIPDTYRTRLVTTTTGVVTTPSFDSSEEARPYIYIQATEPEHPDNKTDLYLYALGNVYEANHIQLHITVGNDSESYSIERKEVDLILTINLKTGFQTIAKIVEYIGFINNALGKTIISCSYDATKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY
Ga0307336_102169	Ga0307336_1021691	F031111	MKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNNPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFP
Ga0307336_103219	Ga0307336_1032191	F095527	SKATRISMLILIPALLLTTIPISILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL
Ga0307336_104567	Ga0307336_1045673	F070167	MSWLGNALFGQSRLKGYNMTPQQLTQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSPSGLLKLLGLY
Ga0307336_106281	Ga0307336_1062811	F077342	MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNAGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEKQRREILNPKRIF
Ga0307336_107322	Ga0307336_1073221	F068879	ISAPWRDNWVTKEEGFVAGATACPGCRRGLTPGVTVFANARIN
Ga0307336_107752	Ga0307336_1077522	F051952	MPKNPRQTIAPDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN
Ga0307336_108572	Ga0307336_1085722	F012026	VEDRFNPKIIAEINGYKQAIEELSKELNRLEVEKGALMEAEEAARKEYIAALNAYDEIYGRFPNAEKEAAELLKRYAKHVEAARRAREILMEKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307336_109972	Ga0307336_1099722	F068879	ATIPNRPVYVIGAPWRDNWVTKEEGFVAGATACPGSRRGLPPGVTVFANARINK
Ga0307336_110555	Ga0307336_1105552	F035785	METKKIEAETAKKMSENELMDAVWEAPDNSIIEINAADPNPQAGDNDGVYLEIIKLDDEESVVRDRWPNLDGTRHIVSTSDIYAIYRALVDQVEEVA
Ga0307336_113031	Ga0307336_1130312	F028541	LKLINRLKTARTSEERDEILWYLAGQDKAARGKVRRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGYITSLLFLFYGLVTIAAAAVKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA
Ga0307336_117139	Ga0307336_1171391	F070165	SLADEPLNGEITMANSKTDCSVSLLIFRNQKTLGIQKKILMVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307336_118029	Ga0307336_1180291	F093911	RTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307336_118162	Ga0307336_1181622	F059033	MAITTANLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVI
Ga0307336_119069	Ga0307336_1190691	F103316	MHRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNETLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0307336_119214	Ga0307336_1192142	F067893	SPEYPMQTVYPRYTMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR
Ga0307336_120476	Ga0307336_1204761	F103196	VVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGGHDELAHLAATGALDVQNQKHLKMLEAWMAARQA
Ga0307336_120528	Ga0307336_1205281	F070165	SLMSCKTAKSLGRFQEPIARLSTDFRESADPGNSKRIMGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307336_122752	Ga0307336_1227522	F020363	FGGMCCWRRVAVARVFALVVRCRVIRLLVYSRVGKNRYTRRESPAAAGAGRTADHLTVLFSQKILAVRKANDIYRPVVHSCF
Ga0307336_123484	Ga0307336_1234841	F029768	LKMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLQFMERATEKMNGILQETESKIEQAIKEIAQEQEK
Ga0307336_124249	Ga0307336_1242491	F052016	RTIVRGIVCDPHGAGGRGRRKGAAMSDRISVVFSGTNKNFLYNCEIPISMLPRTGERIRLSIPGHSDIRCYVEDMEWQYAELEKRIDISIVARVKMLRED
Ga0307336_124554	Ga0307336_1245541	F098317	DKGSVSEMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF
Ga0307336_127111	Ga0307336_1271112	F067770	RSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTEKNKKANK
Ga0307336_129031	Ga0307336_1290311	F025291	PNQRRKQNTGNGKNKHHMVNLQKEINIFRDRAWRVITYNYHLGDNSSTGLYTLNVGADQRYMSFQTLLTTDEFLNMAVVYNDFRIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRVCADDSARIFAPKALSAQSCEWNLRGIGSNFNIWLDTGATIPGQFQIGNYIFG
Ga0307336_129144	Ga0307336_1291441	F099361	NIKNTDSISILIANSGNQKKYHPVSELKADILADVEADKTLQDTIIQGVLSNVAAPVLTTESTITEQDVNPAIVIDVTKNTFIEGDSENAGNWIIDFGATDLVLDTITKVSATKMRITTTGTAEVGTIRILALKDCFEAPIVDSTVLEIEVQESGE
Ga0307336_129625	Ga0307336_1296251	F101223	MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVILDLQPEMDLETFSSIKRNTIDYAIKQAQEAQAKEKA
Ga0307336_129851	Ga0307336_1298512	F074913	AVARVFALVVRCRDMMLFVYSRVGKNRDTRRGSPAGAGAGRGASHKTASLFTQLSRHGKPMTYTDLL
Ga0307336_130678	Ga0307336_1306782	F028541	LKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAVKIVQGQMEGDEIKQLIMGGMFLVVGVVLFAKSRRAQRKAAEET
Ga0307336_131152	Ga0307336_1311521	F099361	NIKNTDSISILIANSGNQKKYHPVSELKEDILADVEADAAFQDIIIQGILGNVAAPVLTTKSTIIEEDVDPAIVIEITKNTFADTVSEEVDNWIIDFGMTTLAFDTITKVSATEIEIATTGTAKVGTIRILALKDCFDAPIVDSTVLEIEVQKSGE
Ga0307336_131203	Ga0307336_1312031	F021262	MSKKYYIKFNTGKELTGTAKEIVTQLRNESRLLAITPRKYARLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMVMEFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028753: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences