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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028752 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321333 | Ga0307346 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Lys1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 46778520 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 30 |
| Associated Families | 26 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales | 1 |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012026 | Metagenome / Metatranscriptome | 284 | Y |
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F017851 | Metagenome / Metatranscriptome | 238 | Y |
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F021795 | Metagenome / Metatranscriptome | 217 | Y |
| F022444 | Metagenome / Metatranscriptome | 214 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F028541 | Metagenome / Metatranscriptome | 191 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F035785 | Metagenome / Metatranscriptome | 171 | Y |
| F045834 | Metagenome / Metatranscriptome | 152 | Y |
| F049736 | Metagenome / Metatranscriptome | 146 | Y |
| F051952 | Metatranscriptome | 143 | N |
| F055836 | Metagenome / Metatranscriptome | 138 | Y |
| F056642 | Metagenome / Metatranscriptome | 137 | Y |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F060102 | Metagenome / Metatranscriptome | 133 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F067893 | Metagenome / Metatranscriptome | 125 | Y |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070166 | Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307346_100602 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 3718 | Open in IMG/M |
| Ga0307346_102985 | All Organisms → cellular organisms → Bacteria | 1899 | Open in IMG/M |
| Ga0307346_103636 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1738 | Open in IMG/M |
| Ga0307346_105119 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales | 1459 | Open in IMG/M |
| Ga0307346_106621 | Not Available | 1275 | Open in IMG/M |
| Ga0307346_106680 | All Organisms → cellular organisms → Bacteria | 1269 | Open in IMG/M |
| Ga0307346_109340 | Not Available | 1046 | Open in IMG/M |
| Ga0307346_109824 | Not Available | 1015 | Open in IMG/M |
| Ga0307346_110398 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 980 | Open in IMG/M |
| Ga0307346_110614 | All Organisms → cellular organisms → Bacteria | 969 | Open in IMG/M |
| Ga0307346_112256 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 886 | Open in IMG/M |
| Ga0307346_114380 | Not Available | 806 | Open in IMG/M |
| Ga0307346_116239 | Not Available | 744 | Open in IMG/M |
| Ga0307346_116353 | Not Available | 741 | Open in IMG/M |
| Ga0307346_116359 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 740 | Open in IMG/M |
| Ga0307346_116360 | Not Available | 740 | Open in IMG/M |
| Ga0307346_117398 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 712 | Open in IMG/M |
| Ga0307346_117399 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 712 | Open in IMG/M |
| Ga0307346_120142 | Not Available | 649 | Open in IMG/M |
| Ga0307346_121292 | Not Available | 626 | Open in IMG/M |
| Ga0307346_122584 | Not Available | 604 | Open in IMG/M |
| Ga0307346_123029 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231 | 597 | Open in IMG/M |
| Ga0307346_123372 | Not Available | 591 | Open in IMG/M |
| Ga0307346_124056 | Not Available | 581 | Open in IMG/M |
| Ga0307346_125233 | Not Available | 564 | Open in IMG/M |
| Ga0307346_126592 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 546 | Open in IMG/M |
| Ga0307346_129128 | Not Available | 516 | Open in IMG/M |
| Ga0307346_130685 | All Organisms → Viruses → environmental samples → uncultured virus | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307346_100602 | Ga0307346_1006024 | F021795 | MKKEADRVRRWREKQKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALSSLKRQAYAPPVLRHFPRREEALARAAAAPPAGRVDHDGNRQPRILIDDLANYPSLEDIEREQAAKEQSGICNPRSGEGFITRLLRSSTGPFSRKKKWFR |
| Ga0307346_102985 | Ga0307346_1029853 | F055836 | SLRRMQWKYGNIAGAQGCCRPASPVRPRVRRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAHLVDDR |
| Ga0307346_103636 | Ga0307346_1036361 | F022444 | GNRAKAAQTEFIRETCAMDAQTRNQLDRKWKKHADEIELEVIQKLKGNSDYHVVEVVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA |
| Ga0307346_105119 | Ga0307346_1051191 | F067893 | GSFSPEYPMQTVYPRYTMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR |
| Ga0307346_106222 | Ga0307346_1062221 | F020914 | MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLKLTYATSANESDDKVEAFS |
| Ga0307346_106621 | Ga0307346_1066211 | F049736 | NAKFAYWIIVWGLVFFAFVIVLGMAEIITTRQILLMGQAYFFLLMIGMLLQMIARRL |
| Ga0307346_106680 | Ga0307346_1066801 | F068879 | DNWVTKEEGFMAGATACPGSRRGLPPGVTVFANARINK |
| Ga0307346_109340 | Ga0307346_1093402 | F051952 | LSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307346_109824 | Ga0307346_1098242 | F070167 | MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSPAGLLKHLGL |
| Ga0307346_110398 | Ga0307346_1103982 | F045834 | GGAGKKRETMKRQHETRMLLFLMTGTAILFFAAAVPLSGFGFFLLAQVAGLVLGGITLVSLFRRYRGLDLFSAASIYVLYVLMIALFSPGVVNALARYLTK |
| Ga0307346_110614 | Ga0307346_1106141 | F012026 | VEDRYNPKIIAEINAYKQAVEELSRELDRLEVEKGALLEAEEAARKEYVAALAAYDELYGRFPNAEKEAGELLKRYAKHVEAAQRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHKGGD |
| Ga0307346_112256 | Ga0307346_1122561 | F093911 | SDSVFLTQNRSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI |
| Ga0307346_114380 | Ga0307346_1143801 | F062800 | LQSVTSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLSAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307346_116239 | Ga0307346_1162391 | F070166 | QGTKRITLQRFLVSKIAYEKDFSQIELAALFHNQLWLQTKCQTDKHFKEKFGKSLEELTKILKECNFSRGLQPGAIKSVRTKVLALEWDFLFPQRNLPNLEAQLRNSIYTKWRKPQGVELSKLPPKKHIGKGYREHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTNKEIISRIKRTIQVREAIKRIDPNWRNTQVAEASGGKVIPKKVG |
| Ga0307346_116353 | Ga0307346_1163531 | F059033 | MAITTANLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVIEMTPNQPIPIVTDTTTNKQMNIFKWIFSSYFTLVIP |
| Ga0307346_116359 | Ga0307346_1163591 | F031111 | KKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFP |
| Ga0307346_116360 | Ga0307346_1163601 | F025291 | KPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307346_117398 | Ga0307346_1173982 | F020363 | GVARVFALVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL |
| Ga0307346_117399 | Ga0307346_1173992 | F028541 | GQREQQGAFMNERERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA |
| Ga0307346_120142 | Ga0307346_1201421 | F070165 | MTASLTSRLTTKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDINVSVKVGVLATFEYKYPTGALPDYEPALIAVI |
| Ga0307346_121292 | Ga0307346_1212921 | F025291 | NSSTGLYTLNVGADQRYMTFQTLLTTDEFLNMAIVYNDFKIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRTCADDSARIFAPKALAPQSCEWNLQGIGPNFNIWLDTGSTIPGQFQIGNYIFGSIPINLGWEVKFQLVCEFTNPK |
| Ga0307346_122584 | Ga0307346_1225841 | F062800 | VSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV |
| Ga0307346_123029 | Ga0307346_1230291 | F060102 | NKPQAPARPAPEEKANFITMMAKLDSGQKHRILAYLFWLIGIFIILFAYRSS |
| Ga0307346_123372 | Ga0307346_1233721 | F056642 | EKLCNCYAQSENQIKQEIYIPPVITVLEITLEKGFAASSASGTEDWGSLTW |
| Ga0307346_123559 | Ga0307346_1235591 | F020914 | MAIYQKYGFAIDQILSEDQALPTYAQPGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKQGVQTDVSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307346_124056 | Ga0307346_1240561 | F067770 | MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKK |
| Ga0307346_125233 | Ga0307346_1252331 | F070165 | IGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFEVGLAPRVLNFQLTKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307346_126592 | Ga0307346_1265921 | F017851 | MTSAASQQFFETFPPEVARGILEGDRLRIHAAKVSVVREAGTTGFAIDTLPRDGRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI |
| Ga0307346_129128 | Ga0307346_1291282 | F035785 | VMIRIEAENALKMTETEMLDVVFEASENSVVELNVVDPDSQAGDNDGVYLEIIKLDDEESVVRDRWPNLDGTRHIVSTSDIYAIYRALVDQVEEVA |
| Ga0307346_130685 | Ga0307346_1306851 | F017318 | NCDGINPSLGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |