3300028751: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Gln2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028751
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321352 | Ga0307365
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Gln2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42281202
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
Not Available	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033058	Metagenome / Metatranscriptome	178	Y
F058179	Metagenome / Metatranscriptome	135	Y
F082739	Metagenome / Metatranscriptome	113	N
F092888	Metagenome / Metatranscriptome	107	Y
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307365_111293	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	877
Ga0307365_112437	Not Available	823
Ga0307365_118422	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	640
Ga0307365_118513	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	638

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307365_111293	Ga0307365_1112932	F092888	MPGPASARGNYGMQPRNNKTIPTTSEGSQVHEQGKLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSVILIQAMATGQTAWNHAAFEPASSLVLAAVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRDATNYEAGMLPGHVSALY
Ga0307365_112437	Ga0307365_1124371	F033058	VETRRASHKRVCTWFVGRWRNHQPKRAEKPHSKSCDRKAQDGPAMRPETPLAVENGVGKPAAPEAPNVGTGKRAWRTPIPRLVPA
Ga0307365_118422	Ga0307365_1184221	F082739	KLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDLLLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVMLATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTAPFVNEATVNGETANATVEFV
Ga0307365_118513	Ga0307365_1185131	F082739	KLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGMVASTNPGQLYGVITVNNTTDTDFTVTDVFGLQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVVSATIDNDANTVSLEIALDEPMATDEKLMIYCKFQTALKGMLPDSNPFVNEAIVNGETVNATVEFI
Ga0307365_123910	Ga0307365_1239101	F105254	ATIYRLYGAGGTKYSLAGKTGRFCTQDSDPGLNNPCKVPPTGEVYYSYRVTDCIGITGDFNQVRDIYIHCDGNFASEWGLDAGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQAGGTPGTTGHSIDDSSNGHPYYKDETEKVRNFDLCLANSPLLIDSGPYTDDFYSKAWVLSLKIVP
Ga0307365_126488	Ga0307365_1264882	F058179	YAFIAVCILAFYLLADAATLSMTGSCAGQGFSNITIEADILMASINQTANGTSWQIWGAL