3300028749: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028749
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321336 | Ga0307349
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28661689
• Sequencing Scaffolds: 15
• Novel Protein Genes: 19
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	1
Not Available	5
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015738	Metagenome / Metatranscriptome	252	Y
F017318	Metagenome / Metatranscriptome	241	Y
F035532	Metagenome / Metatranscriptome	172	N
F037746	Metagenome / Metatranscriptome	167	N
F054063	Metagenome / Metatranscriptome	140	N
F062800	Metagenome / Metatranscriptome	130	N
F068879	Metagenome / Metatranscriptome	124	N
F070165	Metagenome / Metatranscriptome	123	N
F074119	Metagenome / Metatranscriptome	120	N
F092294	Metagenome / Metatranscriptome	107	N
F095527	Metagenome / Metatranscriptome	105	N
F097599	Metagenome / Metatranscriptome	104	N
F098758	Metagenome / Metatranscriptome	103	N
F103316	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307349_100213	All Organisms → cellular organisms → Archaea → Euryarchaeota	5365
Ga0307349_100491	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	3719
Ga0307349_102672	All Organisms → cellular organisms → Archaea → Euryarchaeota	1578
Ga0307349_103011	All Organisms → cellular organisms → Archaea → Euryarchaeota	1473
Ga0307349_104498	All Organisms → cellular organisms → Archaea → Euryarchaeota	1176
Ga0307349_105927	Not Available	1001
Ga0307349_105955	Not Available	999
Ga0307349_107249	Not Available	888
Ga0307349_107398	All Organisms → cellular organisms → Archaea → Euryarchaeota	877
Ga0307349_108814	Not Available	788
Ga0307349_109574	Not Available	748
Ga0307349_110501	All Organisms → Viruses → environmental samples → uncultured virus	704
Ga0307349_116424	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	531
Ga0307349_116477	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	530
Ga0307349_117558	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307349_100213	Ga0307349_1002131	F095527	KMSKATRISMLILIPALLLTTIPVSILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL
Ga0307349_100491	Ga0307349_1004917	F037746	MPVDVEWAKANDTVGQEFESNYIPGTTDKDLEDARGLMEKLLKKYGSRDVLEADERDWAKYKRAMYVVASRSKDAMEAANKAREGLIKRKNLLSKFWEENPDVLFGLSEWQRINLRKYTDLGLLIDQEYLWDLLDELGKEDTIKHLANVANYIYNDTGFMGGVREDYNALEKGPVRSIYHRPTCKSHKTASPSCCKKE
Ga0307349_100491	Ga0307349_1004919	F074119	SEIQVFEVLAKILPYLVSLGIGAFAGWELVKTKIHELAEFFKTVDEALYDDAVTEKEFRAIWEKGRALFQWSFAEKKGEL
Ga0307349_100972	Ga0307349_1009724	F035532	LANIERIFAAYNGLTVVKTWSRPTKLTTAVESPEVNIDLIAASVDSVSLSQPHKKTSFYVRFTIFEEQTTSTSQMDTIYQGIIGAVAANPTLKDSNNAATCDYFGTFNGREISWDLAATERNGISVNAMKIDVPCEVRDT
Ga0307349_101986	Ga0307349_1019864	F035532	LANIERIFAAYNGLTVVKTWSRPTKLTTAVESPEINIDYVVASVDSVSLSQPHKKISFYVRFTIFEEQTTSSSQMDTLYQGILGAVAANPTLEDINKVATCDYFGTFNGREISWDFVATERNGISVNAMKIDVPCEVRDT
Ga0307349_102672	Ga0307349_1026722	F098758	MDNRKALLLGVFFLISILILFSGCNISKEESSPISPKDLCDNIECPNVCKGEDLWNQKCLDGNCVDFVRIESCSEKCGCIVDLCQRVKCSDQCRNEDLWTYKCVDGLCTPDIIKEKCSVQCGCAPKFFYKLIPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEP
Ga0307349_103011	Ga0307349_1030111	F054063	MNAWLYGVESTSNLFFERPKLFYRKWGTLAIHPFIESWGELGMEFQKGLSPYNTVKMFIDALVAAHFFNPDDFEFGGDDNNFTFKAIKCPYKSHCKKLVDSKNEIACLRAITLLGSLDYNVEGESLKYKYNFDFNENAPCNVVFERFKD
Ga0307349_104498	Ga0307349_1044982	F098758	AIFTVITLIWILILSSGCNKPNEEKPPVINKDLCDNIECPNVCKGEDLWSQKCLDGNCVDFVRVESCSEKCGCIVDLCQRIKCSDQCRNEDLWTYKCVDGLCTPDTIKEKCSIQCGCAPKFFYKLNPQARYRLREVGIIANVYSIRSDQVIRAVVTCRTSLCTDPPTVYYTEFDDPFERSEDETVEYFGTIWKNFEPMKGYELKFDKSGTYMIGVSDQYYIEVGFLGDK
Ga0307349_105927	Ga0307349_1059271	F062800	QLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV
Ga0307349_105955	Ga0307349_1059552	F070165	MTASLTSRLTTKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDINVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307349_107249	Ga0307349_1072491	F103316	AMHRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNKTLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0307349_107398	Ga0307349_1073982	F054063	SKVNLMDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIGPFIESWKDLDMEFQKGLSPYNTAKMFIEALVKAEFFNSADFEMAGDDNNFTFKAINCPYKSHCSRLIDEGKEIACLRAITFLGAMEFNKEGESLKYMYKFEFNKETPCLVSFEKFKD
Ga0307349_108222	Ga0307349_1082222	F097599	VFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQKAEGAGVAGGSGDAESTEEQKFANMAAEVAKATGIQFV
Ga0307349_108814	Ga0307349_1088141	F062800	MTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307349_109574	Ga0307349_1095741	F070165	MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307349_110501	Ga0307349_1105011	F017318	MRSPTAASPLKFQRTVEGAFDINCDGINPSLGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK
Ga0307349_116424	Ga0307349_1164241	F015738	ELEDAIGEVFPGESDRVRLAAVEAWGVVMNRVPESGLEGCAWCLHFDRPIDHRLVKEDRPACIEERNGCAGCPESTYRVRRLPDR
Ga0307349_116477	Ga0307349_1164771	F068879	PNRPVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPHGVTVFANARINKTTS
Ga0307349_117558	Ga0307349_1175581	F092294	NLHDVTLQRLDVYHRNNGGYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPQFKDVITRTLPAKFRTVGSVSAAHLTETGEKVLKGAIVFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHILVFDRGACPNCYPNDSGAMFHNLQEPDMPDD