3300028728: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Lys2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028728
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321354 | Ga0307367
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Lys2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53137949
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020914	Metagenome / Metatranscriptome	221	N
F034939	Metagenome / Metatranscriptome	173	Y
F043672	Metagenome / Metatranscriptome	156	Y
F048337	Metagenome / Metatranscriptome	148	N
F064746	Metagenome / Metatranscriptome	128	N
F082739	Metagenome / Metatranscriptome	113	N
F092888	Metagenome / Metatranscriptome	107	Y
F097412	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307367_106035	Not Available	1487
Ga0307367_107825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1280
Ga0307367_114495	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	875
Ga0307367_119051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729
Ga0307367_120744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016	689
Ga0307367_122716	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	648
Ga0307367_122926	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	644

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307367_106035	Ga0307367_1060351	F043672	MVSMKEPEQLTAGVTMIGTSSWGSQTAGIGSIMGSTWSEKIVFDAQPDRVLSKYFLEFTDLVGNNDVTLIIPKIGDIDLMGGRTGSKEGVARVMTKFDTADNITVSLTSADVKLGGCSVSFETASATRVSIVEMAHKQLVRQYLETLETNANACLEGATIGTSNAGSVFGGSTADNSAITSNLAAGDVITVDKIVDMKIILMQKDFGKRPGDSVLILHPIQFKQLLKSSQFTNAAEFGAPEVVRKGVIEEYVGIKIETSTLVTSATQTVAVHYCYMIDPSAAAAIVWKEKAKVKVETKDDERMYNIYLDAWYKMNIINDNAIVIGVFSDA
Ga0307367_107825	Ga0307367_1078253	F048337	MIEKQVTFEGILREDEEQSNETARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRIKEAFDGTINLGTDVAPGRIIADADFVKTVAKRSVAKSIQLDAGKPIQLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307367_114495	Ga0307367_1144952	F092888	MPGPASARGNYGMQPRNNKAIPTTSEGSQVHEQGRLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSVILIQAMATGQTAWNHAAFEPASSLVLAVVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRDTTNYEADMLPGHVSALY
Ga0307367_119051	Ga0307367_1190511	F097412	KEMSVYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFVVTGDDPKVPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAVAGDGMDRKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307367_120744	Ga0307367_1207441	F034939	PLPPTPTGTPITGLCLSNLGITSTCGTIPYLQKIPSDPLPNIHYTYSYLNSGESYRLGFNLEQGSGDWPAGTLAMGPNGISQDLLAASGIDWRDPNNWKTSWGSGLCGATYDQGRKAIKIVNNTWCFLAPTSSGYFPIDTSRKYYIEAEYLTEGTTTYVFFLGTASYDASHNPLDGHWGTYDYFGANQDRPTSTNTWTFVVNKGIGGQPRTGESADTSVLYKWHPGTVW
Ga0307367_122716	Ga0307367_1227161	F082739	NMRRLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTAPFVNEATVNGETANATVEFV
Ga0307367_122926	Ga0307367_1229261	F064746	IMAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAVAFFLDDNTVALIGVETTNDFGMSAWDVINSITV
Ga0307367_128788	Ga0307367_1287882	F020914	MAIYEKYGFAIDQILSENQALPNATSGDSTNTIELQTVADDGLHIVVCAASTIVQLTSAATLEIRPTIGATDGTVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADESADKVEAFS
Ga0307367_129120	Ga0307367_1291201	F020914	MAIYEKYGFAIDQILSENQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASAATLEIRPTIGATDGAVTTVLPSILIKQGVQSDVSWAPGEMICQFNIPAKLIGSARYLKLTYVTSADESDDKVEAFSVRR