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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028726 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321344 | Ga0307357 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ile2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 49096156 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 27 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 5 |
| Not Available | 10 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaU1.Bin208 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F021795 | Metagenome / Metatranscriptome | 217 | Y |
| F022205 | Metatranscriptome | 215 | Y |
| F022444 | Metagenome / Metatranscriptome | 214 | N |
| F022683 | Metagenome / Metatranscriptome | 213 | N |
| F024821 | Metagenome / Metatranscriptome | 204 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F038290 | Metagenome / Metatranscriptome | 166 | Y |
| F039694 | Metagenome / Metatranscriptome | 163 | Y |
| F041848 | Metagenome / Metatranscriptome | 159 | N |
| F045834 | Metagenome / Metatranscriptome | 152 | Y |
| F047698 | Metagenome / Metatranscriptome | 149 | N |
| F049070 | Metagenome / Metatranscriptome | 147 | Y |
| F051952 | Metatranscriptome | 143 | N |
| F055749 | Metagenome / Metatranscriptome | 138 | N |
| F055836 | Metagenome / Metatranscriptome | 138 | Y |
| F060102 | Metagenome / Metatranscriptome | 133 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F074841 | Metagenome / Metatranscriptome | 119 | Y |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F105253 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307357_101168 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 3015 | Open in IMG/M |
| Ga0307357_101611 | All Organisms → cellular organisms → Bacteria | 2610 | Open in IMG/M |
| Ga0307357_102952 | All Organisms → cellular organisms → Bacteria | 1966 | Open in IMG/M |
| Ga0307357_103954 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1721 | Open in IMG/M |
| Ga0307357_104288 | Not Available | 1655 | Open in IMG/M |
| Ga0307357_107115 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1273 | Open in IMG/M |
| Ga0307357_110167 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 1039 | Open in IMG/M |
| Ga0307357_110257 | Not Available | 1033 | Open in IMG/M |
| Ga0307357_110885 | Not Available | 997 | Open in IMG/M |
| Ga0307357_111623 | Not Available | 958 | Open in IMG/M |
| Ga0307357_111673 | Not Available | 956 | Open in IMG/M |
| Ga0307357_113662 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 866 | Open in IMG/M |
| Ga0307357_114422 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 838 | Open in IMG/M |
| Ga0307357_114555 | Not Available | 834 | Open in IMG/M |
| Ga0307357_115882 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 790 | Open in IMG/M |
| Ga0307357_116567 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 770 | Open in IMG/M |
| Ga0307357_118060 | Not Available | 728 | Open in IMG/M |
| Ga0307357_118094 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → unclassified Syntrophus (in: Bacteria) → Syntrophus sp. PtaU1.Bin208 | 728 | Open in IMG/M |
| Ga0307357_118139 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 727 | Open in IMG/M |
| Ga0307357_121276 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 654 | Open in IMG/M |
| Ga0307357_124955 | Not Available | 591 | Open in IMG/M |
| Ga0307357_129276 | Not Available | 533 | Open in IMG/M |
| Ga0307357_130498 | Not Available | 518 | Open in IMG/M |
| Ga0307357_130933 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 514 | Open in IMG/M |
| Ga0307357_131170 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 512 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307357_101168 | Ga0307357_1011683 | F094051 | MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGLMKES |
| Ga0307357_101611 | Ga0307357_1016111 | F039694 | CEAKAARAANGRSGKMKALAATGVQRESRAGRQAQMESNIVETMRRYFQIDTGKTKGDLEYTILNSVKRYFEGKLSEKQR |
| Ga0307357_102952 | Ga0307357_1029521 | F055836 | WIFSLRRMQWKYGNIAGAQGCCRPASPVRPRVRRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAHLVDDR |
| Ga0307357_103954 | Ga0307357_1039541 | F022444 | AMGGNRAKAAQTEFIRETCAMDAQTRNQLDRKWKKHADEIELEVIQKLKGNSDYHVVEVVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA |
| Ga0307357_104288 | Ga0307357_1042882 | F067770 | MIEFKYNSPIFKLGKITRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTVKNKKANR |
| Ga0307357_107115 | Ga0307357_1071153 | F055749 | TNPMNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPTLDEGSEWNATTNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRNAAG |
| Ga0307357_110167 | Ga0307357_1101672 | F060102 | MSKKEKNKPQAPARPAPEEKANFISMMAKLDSRQRHRILAYLFWLIGIFIILFAYRAS |
| Ga0307357_110257 | Ga0307357_1102571 | F051952 | PDHFTSTALSESSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307357_110885 | Ga0307357_1108851 | F070165 | MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307357_111623 | Ga0307357_1116231 | F062800 | NQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307357_111673 | Ga0307357_1116731 | F070165 | MRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307357_113662 | Ga0307357_1136621 | F022683 | MASEMAEQMKPLTDFYAKWSKDSLEMMSKGMAMYNKMSRAWTEVGGEAQAEKPEDALKKWADAFSGSYQDLFEMYTQPFKMFGTVGEVPGKEAWEDAFAKWQKMFTLMPSGSTPAAGDEFMNFSKNWFDGYSKIWQAWMESMQTMGEACRAAVSEGEKPDAAMGAFTEISDKFMQQWSAFVTDQAQAFFSLWRARLPAEKKEPKKTKKE |
| Ga0307357_114422 | Ga0307357_1144221 | F045834 | KAGGAGKKRETMKRQHETRMLLFLMTGTAILFFAAAVPLSGFGFFLLAQVAGLVLGGITLVSLFRRYRGLDLFSAASIYVLYVLMIALFSPGVVNALARYLTK |
| Ga0307357_114555 | Ga0307357_1145551 | F062800 | IFTTLPRRKRNRNKNRGKGAQLQSVTSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307357_115882 | Ga0307357_1158822 | F024821 | KSSSRERYLRTLMRYQEQHGREKASAIQEKFWKDRERVVSESAEEIDWFPSWKQNQILESLLEKTYRDLIREMEHEGLP |
| Ga0307357_116567 | Ga0307357_1165671 | F070158 | AQNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVTRLKEEYRKKGLSIY |
| Ga0307357_118060 | Ga0307357_1180601 | F025291 | NLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307357_118094 | Ga0307357_1180941 | F038290 | DRARGVGKVRKLRVRSASRRGSLVRRFRNFIELSDWDEDLLRRSREIDAFCWMLAVGAAALMVPVSFLVMKG |
| Ga0307357_118139 | Ga0307357_1181391 | F021795 | MKKEADRVRRWREKKKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAVIMEKALTSLKRQAYTPPVLRHFPRREEALARAAASPLPPAAPSAGRVGHEGNRQPRILIDDLANYPSLEDIEREQAAKEQSGICNPR |
| Ga0307357_121276 | Ga0307357_1212762 | F031111 | EKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFS |
| Ga0307357_124955 | Ga0307357_1249551 | F022205 | LPYNKFHNAAEQSTTLTANAFGLPLSRPTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA |
| Ga0307357_127010 | Ga0307357_1270101 | F020914 | MAIYQKYGFAIDQILSEDQALPNADSGDSTNTIKLDTVADDGLHIVVCAASTTVELASNATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307357_129276 | Ga0307357_1292761 | F074841 | MKKMSKKTKKEVLKDLEFFFGKPPYESEYVWHHLTSGLFEEACLMKYGYTPIELMIGLDHIQLSKKQKAEAKKDLKMYFGEPPVSKEAIDKRLSSGLLEMQILAKYLMTVEDLMKEVGFKISK |
| Ga0307357_130498 | Ga0307357_1304981 | F047698 | MQQATAIVGVLIGFLILTQIGIFVCDAMIGASSVNNTSQLYDAQNEAIETFTQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGRQGGY |
| Ga0307357_130933 | Ga0307357_1309331 | F049070 | VRERWRTANRFADVLEAEVKMRRNPLAARVVSWFNLCRVCQDLEEQMLLAPQPGEDDSQLHRALLSTAIASGEGLLLECDDAETLKPLRLTPPALAAKVESLRVTFTQWHTELKPERQAAILKEAFRGTV |
| Ga0307357_131170 | Ga0307357_1311701 | F041848 | RGPVRGAGLGFDRGQGAPFFQHPEVLDPAKDFGERAMTYPSETITTKQYSTAVAAGGALLVSIVSVAHSFVHIRIGAVGVRNLEVERLNLGEFVQFECADGALYEVRLLSVEGFDTATLLVTRIK |
| Ga0307357_132314 | Ga0307357_1323141 | F105253 | GKMKKIIFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIKLLEEYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |