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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028724 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321325 | Ga0307338 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gln1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 39764692 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 26 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 15 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022205 | Metatranscriptome | 215 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F035785 | Metagenome / Metatranscriptome | 171 | Y |
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F040648 | Metagenome / Metatranscriptome | 161 | Y |
| F045183 | Metagenome / Metatranscriptome | 153 | N |
| F052016 | Metagenome / Metatranscriptome | 143 | N |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F055749 | Metagenome / Metatranscriptome | 138 | N |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F067893 | Metagenome / Metatranscriptome | 125 | Y |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F072475 | Metagenome / Metatranscriptome | 121 | N |
| F080199 | Metagenome / Metatranscriptome | 115 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F090569 | Metagenome / Metatranscriptome | 108 | Y |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| F095527 | Metagenome / Metatranscriptome | 105 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307338_101863 | Not Available | 2147 | Open in IMG/M |
| Ga0307338_103355 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1625 | Open in IMG/M |
| Ga0307338_103632 | Not Available | 1562 | Open in IMG/M |
| Ga0307338_104066 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1478 | Open in IMG/M |
| Ga0307338_105832 | Not Available | 1235 | Open in IMG/M |
| Ga0307338_107205 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1097 | Open in IMG/M |
| Ga0307338_107641 | Not Available | 1061 | Open in IMG/M |
| Ga0307338_110307 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 890 | Open in IMG/M |
| Ga0307338_110722 | Not Available | 869 | Open in IMG/M |
| Ga0307338_112008 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 811 | Open in IMG/M |
| Ga0307338_113436 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 756 | Open in IMG/M |
| Ga0307338_114065 | Not Available | 734 | Open in IMG/M |
| Ga0307338_114279 | Not Available | 728 | Open in IMG/M |
| Ga0307338_114852 | Not Available | 710 | Open in IMG/M |
| Ga0307338_114968 | Not Available | 707 | Open in IMG/M |
| Ga0307338_115151 | Not Available | 702 | Open in IMG/M |
| Ga0307338_115274 | Not Available | 698 | Open in IMG/M |
| Ga0307338_118180 | Not Available | 626 | Open in IMG/M |
| Ga0307338_118306 | Not Available | 624 | Open in IMG/M |
| Ga0307338_120592 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 581 | Open in IMG/M |
| Ga0307338_123782 | Not Available | 532 | Open in IMG/M |
| Ga0307338_126014 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 505 | Open in IMG/M |
| Ga0307338_126090 | Not Available | 504 | Open in IMG/M |
| Ga0307338_126117 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231 | 503 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307338_101863 | Ga0307338_1018631 | F082734 | RVSHRHLFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSNRLKLTQKEEKDAQTN |
| Ga0307338_103355 | Ga0307338_1033552 | F095527 | SILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL |
| Ga0307338_103632 | Ga0307338_1036321 | F080199 | ENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKEALKYAIISQNSYVPYNTFLVFGTEKFKPIANEPRYKYPDSERGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL |
| Ga0307338_104066 | Ga0307338_1040661 | F093911 | GDFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNKSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI |
| Ga0307338_105832 | Ga0307338_1058321 | F070165 | MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307338_106884 | Ga0307338_1068842 | F020914 | MAIYQKYGFAIDQILSEDQALPKAKSGDSINTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307338_107205 | Ga0307338_1072053 | F068879 | PVYVIGAPWRDNWVTKEEGFMAGATACPGSRRGLPPGVTVFANARINK |
| Ga0307338_107641 | Ga0307338_1076411 | F052619 | MKSPVYRPVYKFTRVSEDASFNIVCDGINPTLSAFIFMLSQVPNSTDFTNLFDMYCLKKIEIDWVPEYTELTDAAPLSNAVNVRVNSAIDLTDNLAPASVNEVLQFQQLVSTGITKPHKRSWQPTFLMGGLVPCSCWLPTSSSTERHYGLKIGVPPTGVAMTLRAKVKYFVECANVN |
| Ga0307338_110307 | Ga0307338_1103072 | F031111 | VNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP |
| Ga0307338_110722 | Ga0307338_1107221 | F062800 | QTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307338_112008 | Ga0307338_1120082 | F045183 | MKNKETLKRLSDRLLRPALRESEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLFLFHANYTGAAEEWLLYFFGAGAVVGVLSVHKAVMRFLYRIAQFEKPVEGQDRTIMITAE |
| Ga0307338_113436 | Ga0307338_1134362 | F031111 | RKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLFKPKLTFS |
| Ga0307338_114065 | Ga0307338_1140653 | F035785 | RIEAENALKMTETEMLDVAFEASENSVIELNVVDPDSQAGDNKGVYLEVVKLDDEESVVRDRWPNLDGDRHLVRTSDIYAIYRALVDQVEEVA |
| Ga0307338_114279 | Ga0307338_1142791 | F040648 | EEALLEIEPMLDTAREGVTALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQEAVEDVPGEGDEE |
| Ga0307338_114279 | Ga0307338_1142792 | F036251 | MSAKERQTVLFGDTGVTTPIDTTDRVRLSDGMVFVAQKIEVRPSNIYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCTVKSVLNVNTGRRFFTLV |
| Ga0307338_114852 | Ga0307338_1148521 | F070165 | RESADPGNSKRIMGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSGLDVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV |
| Ga0307338_114968 | Ga0307338_1149682 | F067770 | MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTEKNKKANK |
| Ga0307338_115151 | Ga0307338_1151511 | F025291 | RKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307338_115274 | Ga0307338_1152741 | F059033 | MAITTANLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVIDMTPNQPIPIVTDTTTNKQMNIFKWIFS |
| Ga0307338_118180 | Ga0307338_1181801 | F090569 | MGVEGIFKGEVENVYFNLVDNGEFVTLELVDENGNHVMCGNICNISKKSGRIDTCWNINRELGFTLDSYGRVIVD |
| Ga0307338_118306 | Ga0307338_1183061 | F067893 | YTMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR |
| Ga0307338_120592 | Ga0307338_1205922 | F072475 | FAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESIAEHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP |
| Ga0307338_123782 | Ga0307338_1237821 | F025291 | MVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKATTAQSCEWNLKGLGPNFGIWLDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVIEFT |
| Ga0307338_126014 | Ga0307338_1260142 | F055749 | GNNNPMNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPTLDEGSEWNATTNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRNAAG |
| Ga0307338_126090 | Ga0307338_1260901 | F022205 | RTMRNRNKRFLLPYNMFHNATDQTSSITTNVFGFPLSRPLRPHAVEVRYAHSAPVGVRFRIYAGNGEEVYVSPALVAGPAPQVFKASLPANTDFAMYGPSQIVMDFAGTATWAIRLIMAHKENTA |
| Ga0307338_126117 | Ga0307338_1261171 | F052016 | IVCDPHGAGGRGRRKGAAMSDRISVVFSGTNKNFLYNCEIPISMLPRTGERIRLSIPGHSDIRCYVEDMEWQYAELEKRIDISIVARVKMLRED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |