3300028723: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028723
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321347 | Ga0307360
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33507177
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin080	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus aciditrophicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA179	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F020363	Metagenome / Metatranscriptome	224	Y
F021795	Metagenome / Metatranscriptome	217	Y
F022205	Metatranscriptome	215	Y
F022683	Metagenome / Metatranscriptome	213	N
F028541	Metagenome / Metatranscriptome	191	Y
F029768	Metagenome / Metatranscriptome	187	N
F031111	Metagenome / Metatranscriptome	183	N
F043478	Metagenome / Metatranscriptome	156	N
F049736	Metagenome / Metatranscriptome	146	Y
F058971	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307360_100045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin080	10261
Ga0307360_100110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus aciditrophicus	7668
Ga0307360_101185	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	2720
Ga0307360_102200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1958
Ga0307360_105605	Not Available	1141
Ga0307360_110272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA179	785
Ga0307360_111680	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	724
Ga0307360_114157	All Organisms → cellular organisms → Bacteria	642
Ga0307360_117094	Not Available	570
Ga0307360_117575	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	561

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307360_100045	Ga0307360_1000452	F020363	VARVFALVVRCRVMRLLLYYRVGKNRDTRRGSPAGAGAGRTADHLTILFSQKVLAVRSANDIYRPVIASAVNSILR
Ga0307360_100110	Ga0307360_1001107	F043478	MDPYDGHSAWKFQYSHPAGTGVKGRRISLLSWLANLIFLSGTLLFAYQLYGWFEYNEWTRYPSIALVKYVPAGAFGFLNEAAGVKAFAMWILDRADLSVLLILMGFFTA
Ga0307360_101185	Ga0307360_1011852	F021795	MKKEADRVRRWREKKKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAVIMEKALTSLKRQAYTPPVLRHFPRREEALARAAASPLPPAAPSAGRVGHEGNRQPRILIDDLANYPSLEDIEREQAAKEQSGICNPRSGEGFITRLLRSSTGPFSRKKKWFR
Ga0307360_102200	Ga0307360_1022001	F028541	QREQQGAFMNERERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA
Ga0307360_105605	Ga0307360_1056051	F049736	RNAKFAYWIIVWGLVFFAFVIVLGMAEIITTRQILLMGQAYFFLLMIGMLLQMIARRL
Ga0307360_110272	Ga0307360_1102721	F058971	MTPNLIINLDIEPITLMWNGQAISLPGTYELVPDNEIKHLHKRVVAVALHERRRVPLYGRVVGKARYGKHSVWLIE
Ga0307360_111680	Ga0307360_1116801	F031111	VRTKRVKKVTGMKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLCKPKLTFS
Ga0307360_114157	Ga0307360_1141571	F012026	MNLKEVQAQTAALIGKRAEAINILHRLEKVEDRFNPKIIAEINGYKQAIEELSKELNRLEVEKGALMEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMEKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307360_117094	Ga0307360_1170941	F022205	AAEQSTTLTANAFGLPLSRPTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA
Ga0307360_117575	Ga0307360_1175751	F022683	SLEMMTKGMAMYNRMSRAWTEVGAGSSAEKPEDLLKKWTEAFGGSYNDLFEMYTQPFKMFGMGGQGKEEWENVFAQWQKMFTAMTSGSAPAAGDEFMQFSKSWFEGYSKVCRAWVDSMQKMGETCKNAMTEGDKPDSAMGSLSEISETFMKEWSSFVTEQAQAFFSLWRSRLPAEKKEPKKPKKE
Ga0307360_118572	Ga0307360_1185721	F029768	VLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSSHSLRFMERATEKMNSILQETESKIEQAIKEIEQEQEK