3300028670: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_50m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028670
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0297570 | Ga0257143
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_50m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105377873
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F019930	Metagenome / Metatranscriptome	227	Y
F026446	Metagenome / Metatranscriptome	198	Y
F046170	Metagenome / Metatranscriptome	151	Y
F052683	Metagenome / Metatranscriptome	142	Y
F083668	Metagenome / Metatranscriptome	112	Y
F088317	Metagenome / Metatranscriptome	109	Y
F089118	Metagenome / Metatranscriptome	109	Y
F100259	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257143_1001855	All Organisms → Viruses → Predicted Viral	3451
Ga0257143_1002632	All Organisms → cellular organisms → Bacteria	2980
Ga0257143_1003407	Not Available	2641
Ga0257143_1018177	Not Available	1105
Ga0257143_1021130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1012
Ga0257143_1026014	Not Available	892
Ga0257143_1029526	Not Available	825
Ga0257143_1030981	Not Available	801
Ga0257143_1031153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	798
Ga0257143_1043316	Not Available	652
Ga0257143_1056594	Not Available	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257143_1001855	Ga0257143_10018553	F019930	MRKLNLKDYMVKVKAPDQMNPGKVIEGEYPYHTKDSILNLLFIRDLQLSGAELVKQNVLAMKLETCKDDEILLEDEEYNRIKRAIDTFKGFGRNDVGLVTRINEAEVVEVKTK
Ga0257143_1002632	Ga0257143_10026322	F026446	MKVTGETFSFIQKEKKSRRGKIPKVFKLSGKRTVTGQNSGELYTKKHRGGNS
Ga0257143_1003407	Ga0257143_10034071	F026446	KVTGETFSFKEKRSRRGKVLKVSKLSGKRTVTGQNSGELYTKKHRRGNS
Ga0257143_1018177	Ga0257143_10181771	F046170	WWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQSHATQRSYQPEFNKTMAW
Ga0257143_1021130	Ga0257143_10211302	F089118	RLIWVILFAVLVGALVLFSLKSMQTGTRLSQRLGEIEQARETLSGMFPDSRFRVQFSAPKPGIRNLVITIQPGHADSGAITQMVESAESVARRKVDLTGYDSLVVAVFDSVYRTVPAR
Ga0257143_1026014	Ga0257143_10260141	F052683	ISKIQKKGIMGPIISVFVLVLIISILSGLTFLFVGQLKSQVSETATGGENSTAYQAVNDTEAAGATVVGYLPLIFLAIIFGAILTLVLKIILPYINLGQQMGGGF
Ga0257143_1029526	Ga0257143_10295261	F000344	MRPIHPHAAESGVGKHTARNCESAQACAAGKERVANAHPHKL
Ga0257143_1030981	Ga0257143_10309812	F000344	MRPTSAHAALSGVGEHTARESESAKCCADGKERVANAHP
Ga0257143_1031153	Ga0257143_10311531	F088317	MPGPEDKFSYPPRPTLTQDDVNKTRPTTRRDAYEGVKTPALPPMDKSQILRAIESGFKEAENPARYVMRPPADLPYRVLPLNTKFYSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDAYASFAYSEFATARARGQLKNAPNCTAREIGAFIATVYDIQNFPIVIAEASDKRVRIQLYKGLPIYCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPDA
Ga0257143_1043316	Ga0257143_10433161	F100259	MAQNYISGGESVCLYAFEDQTGWTKAVASHTASDETYMPFGQGVEVSVSRNNNAERIYGVGARNATATINKQYAGTVTVNGALSNAYWLLGVLGANADAGTSGAYTHTYTELDRITSFTTKTSFELGTTDAASNLIGCRVNTCTISAAVNEALKFSLECPYRYEALGTTKTSNLADVEPVFTFAHGSIEMPDGTTIAAVQSFELTINN
Ga0257143_1056594	Ga0257143_10565941	F083668	MKWTPDKITAMVLVIGCLALIFTGIDGEVKSILTLSAGWLFGGAYIAAKTK