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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028622 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0313028 | Ga0302253 |
| Sample Name | Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Trp |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 215697058 |
| Sequencing Scaffolds | 28 |
| Novel Protein Genes | 32 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 4 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SC_K08D17 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000388 | Metagenome / Metatranscriptome | 1201 | Y |
| F018007 | Metagenome / Metatranscriptome | 237 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F024972 | Metagenome / Metatranscriptome | 203 | Y |
| F036991 | Metagenome / Metatranscriptome | 169 | Y |
| F048337 | Metagenome / Metatranscriptome | 148 | N |
| F051239 | Metagenome | 144 | Y |
| F053881 | Metagenome / Metatranscriptome | 140 | N |
| F058248 | Metagenome | 135 | Y |
| F065806 | Metagenome / Metatranscriptome | 127 | N |
| F066564 | Metagenome / Metatranscriptome | 126 | Y |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F069433 | Metagenome / Metatranscriptome | 124 | N |
| F072819 | Metagenome | 121 | N |
| F073228 | Metagenome / Metatranscriptome | 120 | N |
| F076867 | Metagenome | 117 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F079783 | Metagenome / Metatranscriptome | 115 | N |
| F081379 | Metagenome / Metatranscriptome | 114 | N |
| F082739 | Metagenome / Metatranscriptome | 113 | N |
| F095527 | Metagenome / Metatranscriptome | 105 | N |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| F102132 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0302253_1000139 | All Organisms → cellular organisms → Bacteria | 76686 | Open in IMG/M |
| Ga0302253_1000288 | All Organisms → cellular organisms → Bacteria | 46547 | Open in IMG/M |
| Ga0302253_1000411 | All Organisms → cellular organisms → Bacteria | 36784 | Open in IMG/M |
| Ga0302253_1000503 | Not Available | 31220 | Open in IMG/M |
| Ga0302253_1000841 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica | 21890 | Open in IMG/M |
| Ga0302253_1000895 | All Organisms → cellular organisms → Bacteria | 21013 | Open in IMG/M |
| Ga0302253_1001377 | Not Available | 14818 | Open in IMG/M |
| Ga0302253_1001485 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica | 13962 | Open in IMG/M |
| Ga0302253_1001907 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans | 11325 | Open in IMG/M |
| Ga0302253_1004286 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 5852 | Open in IMG/M |
| Ga0302253_1004960 | Not Available | 5179 | Open in IMG/M |
| Ga0302253_1006453 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium | 4146 | Open in IMG/M |
| Ga0302253_1007189 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | 3756 | Open in IMG/M |
| Ga0302253_1008758 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 3178 | Open in IMG/M |
| Ga0302253_1013996 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 2090 | Open in IMG/M |
| Ga0302253_1015980 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1867 | Open in IMG/M |
| Ga0302253_1016453 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1820 | Open in IMG/M |
| Ga0302253_1018472 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1641 | Open in IMG/M |
| Ga0302253_1023863 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 1318 | Open in IMG/M |
| Ga0302253_1028383 | Not Available | 1143 | Open in IMG/M |
| Ga0302253_1035584 | Not Available | 957 | Open in IMG/M |
| Ga0302253_1037372 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 921 | Open in IMG/M |
| Ga0302253_1042204 | Not Available | 840 | Open in IMG/M |
| Ga0302253_1051456 | Not Available | 721 | Open in IMG/M |
| Ga0302253_1052390 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SC_K08D17 | 712 | Open in IMG/M |
| Ga0302253_1066182 | All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus | 597 | Open in IMG/M |
| Ga0302253_1081930 | Not Available | 510 | Open in IMG/M |
| Ga0302253_1083213 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0302253_1000139 | Ga0302253_100013930 | F072819 | MFQDQIKAQEVSFKIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMDVQALVDALCEVYRDLGVEGDKGNVSTFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI |
| Ga0302253_1000139 | Ga0302253_100013931 | F069433 | MAHKMPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNTEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGIHFRQMMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECQYSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGTCEYQGGHNHSAWNCKCNPYS |
| Ga0302253_1000139 | Ga0302253_100013953 | F076867 | MDEKNRNLVEIAKKKRYIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAVGEIARFKVGDVFKWFYKKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHIAPKLYQQDPKVICEMLDQEIRYIIEQFAGKQNANKAGKGNP |
| Ga0302253_1000288 | Ga0302253_10002886 | F072819 | MGMFQDQTKAQEVSFRIARLEDENAVSELVNWCRKNLDELTVQCFTHKRFMSVQALVDVLCEVYRDLGVEGDKGNVSAFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI |
| Ga0302253_1000411 | Ga0302253_10004118 | F024972 | MKITKVTKSYFETEGERVYFFEPLDEEMTITELQELMDENEKFLLNEIQKMKKEKL |
| Ga0302253_1000503 | Ga0302253_100050346 | F051239 | MRDVHARVYRMPLVQQDREEGSGPDEVMGWQGADTIMAKLTEREREGFEKILVADLKAINVRFMSQIKDFWGIARNKVMERRGWDKLEREKQELEYQKKKIIDRIHEIESSMHKEDLRVEQIVELGGTTNKYGEGRDAAFYGIPVTSQFDYEIVEYIRSNIDLEIPSKILRDVCESSIRALTMAGTFEEARAAYEKFYSLDFRKFGVDIPPRLDELCSDKKTMLYAQQSLKQIDSGKPDMKLLEVVDDTTQE |
| Ga0302253_1000841 | Ga0302253_10008419 | F076867 | MDEKNRNLVEIAKKKRYIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAAGEIARFKVGDVFKWFYVKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDQEIRYIIEQFAGKKNANKDGKGNS |
| Ga0302253_1000895 | Ga0302253_100089520 | F102132 | MVSKKVIKNLEAAINRICEDIKDKKGGSGADKLDSLSKLVNSYSRLVERDKEKKVNPAEDGDPTFHSKLEAQGKDMRGIIR |
| Ga0302253_1001377 | Ga0302253_10013773 | F000388 | MKVIKVTKDYYETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKDGSK |
| Ga0302253_1001485 | Ga0302253_100148515 | F069433 | MAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNAEFVRRGLTQASFTDPTITALVTEIRKVHVDELRSELAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGTHFRQMMQKVQALTTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWNCASINLPSAAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGSCEYSGGHDHTAWNCKCNPYT |
| Ga0302253_1001907 | Ga0302253_10019071 | F036991 | MSVTRKLSGIVAHNLSGLDSHRMEVTDAMDRDATGDPEDAI |
| Ga0302253_1004286 | Ga0302253_10042865 | F069433 | MAHKMPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNSEFVRRGLTQASFTDPTITALVTEIRKVHVDELRSEFAACKSGRGESGYCPQDSSGCMDFTDPTITALSTEVRGIHFRQAMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECSHSINHYWNCASINLPSSAEHPYKSANPPVAWDGYVPWDWCVYTPPGSNWGSCEYSGGHDHTAWNCKCNPYS |
| Ga0302253_1004960 | Ga0302253_10049602 | F067770 | MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGVDINRQPFQKYSAMTQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGNKYLEKIAKLQTARNKKANR |
| Ga0302253_1006453 | Ga0302253_10064533 | F018007 | VFNGWKITNIFDVAPCELNTVDGPYNKTGYRLERREDGFAITVGMMEHISGWSAWEVLGWLNEKQAIPRRYDNAKRH |
| Ga0302253_1007189 | Ga0302253_10071893 | F099361 | MNIKNTDSISILIANSGNQKKYYPVSELKADILADVEADETLQTIISDKVLADVETDETLQDIIIQGILDNVAAPVLAAESTITEEDADPAITISVKKNTFIDTDSEIAENWFIDFGATDLILNTITKVSATKINITTTGTAKVGTIRILALKDCFEAPIVDSTVLEIEVQESGE |
| Ga0302253_1007189 | Ga0302253_10071896 | F020914 | MAIYQKYGFAIDQILSEDQALPNAQPGDSTNIIELQTIADDGLHIVVCAASTTVELTSGASLEIRPTVGLTANAVTTVLPSILIKQGVQTDVSWDSGEMICQFNIPAKLIGSARYLKLTYVTSADESADKVEAFSVRR |
| Ga0302253_1008758 | Ga0302253_10087583 | F082739 | MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVMSAAVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDIATFVNEATVNGETANATVEFV |
| Ga0302253_1013996 | Ga0302253_10139961 | F072819 | HGEEMFQDQIKAQEVSFRIARIEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQALVDTLCEVYRDLGVEGDKGNVSTFVLFLAGKHRDKIYASHVVELNDTHRQILRDKLGLDIEEIEPGLSKLDWRTDAGI |
| Ga0302253_1015980 | Ga0302253_10159804 | F048337 | MTLIEETVTFEGILRREEMPDTETARLQDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTDAAPGRIIADADFVKTVGKRSTAKSIQINAGKAIQLVLGPGTTGKIEVHVTGFLLMPTLL |
| Ga0302253_1016453 | Ga0302253_10164531 | F095527 | QSINYVVKMKKTVKISLLILMPTLLILALPIGVFSEDYNSATTSAISYLEKIDPQNPYLPLAKDNLNTDPKMSVNFALKGIISSNKGQKQENLNEALRIMNSLDLIPEDRMDMYDILIFEYNLTRSQKYIEDSTKTSNLRYVESSSEYLKNANEDLTEIKGNGLVESETQLKKISDNYINKTSNYSNLYREMALLSSKEERYLASILFSIYAKNNEVIFDESIESIMTRFESEWNSFFGQGVYTDSQFSPASLKELQSKAVRYKEEGNEDFANVITEYVKFQAVSYTEFINAIEEGGL |
| Ga0302253_1018472 | Ga0302253_10184724 | F081379 | EARPYVKITATQETAETDLYLYALGNVYEANHIQLHITVGNASESYSIERKEVDLILTINLKTGFQTIAKIVEYIGLINNALGKTIISCSFDANKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY |
| Ga0302253_1023863 | Ga0302253_10238632 | F036991 | SVTRKLSGIVAHNLSGLDSHRMEVTDAMDRDATGDPEDAI |
| Ga0302253_1028383 | Ga0302253_10283831 | F065806 | IKIYNWYGNKQNAVSIGESYNGGAAYNRRTYYGGYTQDNTAEADGGSGKCLQFNPKSATYWIEQDFVVPVAASTARTVSIKMKDDASFNGKVELELWYNGVLIVGPTEKTMTESYVAQEMTATAGQITSDGVLVLKVKVYGTAGCVYADTLTYS |
| Ga0302253_1035584 | Ga0302253_10355841 | F066564 | METTLNLESKEKLDCGTIKKLLQKHLTAVDSIAVKQIHNVSADNGITYIAKVLSNCDSKVLLSQVYSISKVLDQDCIAYSSSDSVIGKGFVGIKPYSTFDDNLFIDYDSLKPLAAVKGVE |
| Ga0302253_1035584 | Ga0302253_10355842 | F079783 | MKVLVTDFFDVWGNSKDGWEVNNQCHDVYNTRFKLDSRKSCLKFLKSIDYLKKSVREASIYWEDMDNGYILYQAKDLMPICSVEFGEIVDKYYDCLSVYY |
| Ga0302253_1037372 | Ga0302253_10373722 | F077342 | MARTLNEFIVSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGSIDQVFDINMQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEEQRREILNPKRIF |
| Ga0302253_1042204 | Ga0302253_10422043 | F073228 | MAITIGDIMDVNNSKYGEFLYKIVMVYPHNMEVDKTELARLIKINNNTLTFERKTGEKFTLDERDIEHMDLFRSPNYK |
| Ga0302253_1051456 | Ga0302253_10514562 | F000388 | MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANERLVKELKDGTNTISK |
| Ga0302253_1052390 | Ga0302253_10523902 | F058248 | MMQTPRDRILWILTNSGGKMDRSRLRRCAGIKLADLNLILSELAREGRIRITDGAVSLI |
| Ga0302253_1066182 | Ga0302253_10661821 | F076867 | SLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAVGEIARFKVGDVFKWFYKKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHIAPKLYQQDPKVICEMLDQEIRYIIEQFAGKQNANKAGKGN |
| Ga0302253_1081930 | Ga0302253_10819301 | F065806 | AARNRVYFCGGYTQDNTAEADGGSGKCIQFNPKSATYWIEQDFNVPVTASTARTVSIKMKDDSSFDGNVYLELWYLGVCIVGPTEKTMTTSYAAQEMTATSGMITADGVLTLKVKVYGTAGAVYADTLSYT |
| Ga0302253_1083213 | Ga0302253_10832132 | F053881 | MPGIPSISKGSFGEKERRIYSKLYNHLLESFEIDEIAADQIATSLIIQKCVLIPRLISGEDIDINQMGESIRKWLSEYRLTPKSKEKESEVTINLSAIIEEIHRERDNQS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |