3300028582: Sewage microbial communities from Oakland, California, United States - Biofuel 11 (Illumina Assembly)

Overview

Basic Information

• IMG/M Taxon OID: 3300028582
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0134355 | Gp0307529 | Ga0268360
• Sample Name: Sewage microbial communities from Oakland, California, United States - Biofuel 11 (Illumina Assembly)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 260064811
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum lacunae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sewage Microbial Communities From Oakland, California, United States
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Sewage → Sewage Microbial Communities From Oakland, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 37.82
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004177	Metagenome / Metatranscriptome	449	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y
F083634	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0268360_1000003	All Organisms → cellular organisms → Bacteria → Acidobacteria	785206
Ga0268360_1000005	All Organisms → cellular organisms → Bacteria → Acidobacteria	727323
Ga0268360_1013831	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	2210
Ga0268360_1016454	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanospirillaceae → Methanospirillum → Methanospirillum lacunae	1841
Ga0268360_1065342	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0268360_1000003	Ga0268360_1000003634	F004177	MSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQRLYLNRPVTVGDVKGYVQAAPTGSGLTFTIYVGGTVWLTLTIPAGQTAVVATPSQISTLTQIPANTAVSIGISAVGTTFPGASLSVFIYS
Ga0268360_1000005	Ga0268360_1000005257	F030458	MPFQARITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA
Ga0268360_1000005	Ga0268360_1000005258	F041367	VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGGSPLCA
Ga0268360_1000005	Ga0268360_1000005259	F031889	MYGDIPAAGITIRVPNPPKTAQLRLPTNEEMLERLDQQRSIRRTIGRRKSQTEFVPNLKADLDLFSKIRLDEDGAEFDEFEAGNAISKLSFCEVTDCQRAGDEYRVTLRTPFGETVHMVKIPTQRDITVYRRTVVSSTDLPHGQEELRYRIEPAVDLYDSVVTKIEGYAASIKPADVPPHHKSAVVVELVQAIDDLDPALDPNS
Ga0268360_1013831	Ga0268360_10138312	F083634	MYIMLKMADQIISLDRIKINGRVCRLARKLIVTVEHEDDRLTLSNEEFGLVVSAETLEEGIAGISEELAVLWEVYVDEDPANLTADALRLRSNLTSLVPAGASL
Ga0268360_1016454	Ga0268360_10164543	F083634	MYIMLKMADQTISLDRIKINGRVCRLARKLIVTVEHENDRLTLSNKEFGLVVSAETLEEGITGLSEELASLWEVYVDADPANLTADALRLRSNLTSLVPA
Ga0268360_1065342	Ga0268360_10653421	F083634	MYIMLKMADQIISLDRIRIGGRVCRLARKLIVTVEHEDDRLTLSNEEFGLVVSAETLEEGIVGLSEELASLWEVYVGADPANLTADALRLRSNLTSLVPAGVSP