Sample 3300028580

Overview

Basic Information
IMG/M Taxon OID	3300028580 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0134355 \| Gp0307528 \| Ga0268357
Sample Name	Sewage microbial communities from Oakland, California, United States - Biofuel 10 (Illumina Assembly)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	176743601
Sequencing Scaffolds	7
Novel Protein Genes	7
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sewage Microbial Communities From Oakland, California, United States
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Sewage → Sewage Microbial Communities From Oakland, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	37.82	Long. (^o)	-122.29	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F004177	Metagenome / Metatranscriptome	449	Y
F011098	Metagenome / Metatranscriptome	295	Y
F024459	Metagenome / Metatranscriptome	205	N
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F041367	Metagenome / Metatranscriptome	160	Y
F083634	Metagenome	112	Y

Family

Category

Number of Sequences

3D Structure?

F004177

Metagenome / Metatranscriptome

449

F011098

Metagenome / Metatranscriptome

295

F024459

Metagenome / Metatranscriptome

205

F025048

Metagenome

203

F030458

Metagenome

185

F041367

Metagenome / Metatranscriptome

160

F083634

Metagenome

112

Scaffold	Taxonomy	Length	IMG/M Link
Ga0268357_101414	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	16115	Open in IMG/M
Ga0268357_105787	All Organisms → cellular organisms → Bacteria → Acidobacteria	3505	Open in IMG/M
Ga0268357_106017	All Organisms → cellular organisms → Bacteria	3396	Open in IMG/M
Ga0268357_108465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2465	Open in IMG/M
Ga0268357_111346	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
Ga0268357_115211	Not Available	1455	Open in IMG/M
Ga0268357_136457	Not Available	649	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0268357_101414

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales

16115

Open in IMG/M

Ga0268357_105787

All Organisms → cellular organisms → Bacteria → Acidobacteria

3505

Open in IMG/M

Ga0268357_106017

All Organisms → cellular organisms → Bacteria

3396

Open in IMG/M

Ga0268357_108465

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

2465

Open in IMG/M

Ga0268357_111346

All Organisms → cellular organisms → Bacteria

1893

Open in IMG/M

Ga0268357_115211

Not Available

1455

Open in IMG/M

Ga0268357_136457

Not Available

649

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0268357_101414	Ga0268357_10141411	F083634	MYIMLKMADQTISLDRIRIGGRVCRLARKLFVTVEHENDRLTLSNEEFGLVVSAETLEEGIAGISEELATLWEVYVDADPANLTADALRLRSNLTSLVPAGVSL
Ga0268357_105787	Ga0268357_1057876	F025048	MLNPTLITDAIASVLLSIPELYAAMGGRITAFHYRLGQEHRLAEAIYKMPAPSMLIVWEGTKGGSFDGQTIWKHRWGVYYRMGNAAGVAEPVGYEDLWWITCNCPPGGSGPNIRYLQLYPGLDIMDTPSIDHELDEDLIDRFKGLFIIPEIGDN
Ga0268357_106017	Ga0268357_1060173	F004177	MVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQRLYLNRPVTVGDVKGYVQAAPTGSGLTFTIYVGGTVWLTLTIPAGQTAVVATPSQISTLTQIPANTAVSIGISAVGTTFPGASLSVFIYS
Ga0268357_108465	Ga0268357_1084653	F030458	RITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA
Ga0268357_111346	Ga0268357_1113461	F011098	VRRASLGRAIAESVVPGLTCLVLAAAVITALGWWFHAHYALSWQSPVAVHFQLPFVLAERTVSEGALQAQADQQGRGLTAWQQYACRKFGPDCRVALAIQRAENAAGKCEIYHYNTDGTLDWGYFQINTVHLKRPGLNLRDLLDCKANIDFAYQLFREKGGFTPWSTYKDGRYLRYMGVN
Ga0268357_115211	Ga0268357_1152111	F024459	PANTTTYSITLDNIVWSAVAGFQSYVLFASTQDDLICGQQLSTVGNVVASGTLTATGDGTTYTPASVTLNRPLVRSTFALPSPYVDKVRIKAKRIIQGGVVGFSVDSVAAGVVVSGSLAVAPPAANPNFTPVGRIVSVYGRPEGATPFFSGTVTSWDSTTGTLGISPDPNGIVEAGDVLAVRFKADASNSANPTTITDSGCISTTFPTGMTPGAHVGNLIRVIQGASRGTPPRKIVANTATSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLVAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQPLYLNRPVTVGDVKAYVQAAPTGSGLTFTIYVGGTTWLTLTIPAGQTAVVATPSQISTLTQIPANTSVSIGIAAVGTTFPGANLSVFIYS
Ga0268357_136457	Ga0268357_1364571	F041367	VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGG

Scaffold ID

Protein ID

Family

Sequence

Ga0268357_101414

Ga0268357_10141411

F083634

MYIMLKMADQTISLDRIRIGGRVCRLARKLFVTVEHENDRLTLSNEEFGLVVSAETLEEGIAGISEELATLWEVYVDADPANLTADALRLRSNLTSLVPAGVSL

Ga0268357_105787

Ga0268357_1057876

F025048

MLNPTLITDAIASVLLSIPELYAAMGGRITAFHYRLGQEHRLAEAIYKMPAPSMLIVWEGTKGGSFDGQTIWKHRWGVYYRMGNAAGVAEPVGYEDLWWITCNCPPGGSGPNIRYLQLYPGLDIMDTPSIDHELDEDLIDRFKGLFIIPEIGDN

Ga0268357_106017

Ga0268357_1060173

F004177

MVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLAAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQRLYLNRPVTVGDVKGYVQAAPTGSGLTFTIYVGGTVWLTLTIPAGQTAVVATPSQISTLTQIPANTAVSIGISAVGTTFPGASLSVFIYS

Ga0268357_108465

Ga0268357_1084653

F030458

RITRARFVLGPFTAEDMQTLGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKASHGLMPVRDWVWTGRTLRSLKVKSVNENQAVIGFVNPNADRIAHANNLREKQFGVSPKDRSALNAAVLALLRQARAIRVKRAA

Ga0268357_111346

Ga0268357_1113461

F011098

VRRASLGRAIAESVVPGLTCLVLAAAVITALGWWFHAHYALSWQSPVAVHFQLPFVLAERTVSEGALQAQADQQGRGLTAWQQYACRKFGPDCRVALAIQRAENAAGKCEIYHYNTDGTLDWGYFQINTVHLKRPGLNLRDLLDCKANIDFAYQLFREKGGFTPWSTYKDGRYLRYMGVN

Ga0268357_115211

Ga0268357_1152111

F024459

PANTTTYSITLDNIVWSAVAGFQSYVLFASTQDDLICGQQLSTVGNVVASGTLTATGDGTTYTPASVTLNRPLVRSTFALPSPYVDKVRIKAKRIIQGGVVGFSVDSVAAGVVVSGSLAVAPPAANPNFTPVGRIVSVYGRPEGATPFFSGTVTSWDSTTGTLGISPDPNGIVEAGDVLAVRFKADASNSANPTTITDSGCISTTFPTGMTPGAHVGNLIRVIQGASRGTPPRKIVANTATSLTWDLPMVINPGDVWIIEEPMWENSADSTSISNASALATATMSLPTNNYVTTGMLVAGFTVDTNGNESPDGDAPIREDWVFGADGLSKVAGLVFQMQGTLGIESNAAQPLYLNRPVTVGDVKAYVQAAPTGSGLTFTIYVGGTTWLTLTIPAGQTAVVATPSQISTLTQIPANTSVSIGIAAVGTTFPGANLSVFIYS

Ga0268357_136457

Ga0268357_1364571

F041367

VHAADLCDGGADGPRGCPDANDVTCGKCGLARTVDDTNAPGACPQCGGWQFTVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAAHFSIPWSDVTAEEVRGLQILKEERERYQREQMQKRTGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028580: Sewage microbial communities from Oakland, California, United States - Biofuel 10 (Illumina Assembly)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences