3300028531: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G36

Overview

Basic Information

• IMG/M Taxon OID: 3300028531
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272188 | Ga0233385
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G36
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 193708877
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038084	Metagenome / Metatranscriptome	166	Y
F060691	Metagenome / Metatranscriptome	132	Y
F101280	Metagenome	102	Y
F104679	Metagenome	100	Y
F105520	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233385_1006335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3	3410
Ga0233385_1055940	Not Available	751
Ga0233385_1084405	Not Available	551
Ga0233385_1092920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233385_1001825	Ga0233385_10018256	F104679	MSPIVIDRPVVTVSVLRPLLGDSVVVRTASALWRGTLLSCVKDSAWFVVDDVDVVVPLDDLLSVRAA
Ga0233385_1006335	Ga0233385_10063355	F101280	LTIRVRIHGEAWTGSFERDHTVLVGRGRTSDIRVGNQLVQGRWTVSKDHAEILWDGTRWRTVNVSDKPGLLSVYEPGYEEVPLEPGREWAPVRHRWSYAIGRPDHRFHVICATDDHLGPAAVIPGDDLLDADGGAFGGASDGSGASDDEQTAGLDTAVALSFTPLERRVLLAYYSAFASLPRPATLEPRAHDDAAHRLGRSRDSTRKAIERVNEKIRVAHDAPAIATGRNVSAEIGRWLARSGILDPDLVPAD
Ga0233385_1055940	Ga0233385_10559402	F038084	HTVKGFGIVNKAEIDVFLELSCFFDDLADVGNLISGSSAFSKSSLNIWKFSIHILLKPGLGNFEHYITSM
Ga0233385_1084405	Ga0233385_10844051	F060691	MLMAVEGMDPTLKMIFFAAAVVLFVLAAIGYSRGKVSFLAAGLAAFAIPFFWDALAAS
Ga0233385_1092920	Ga0233385_10929201	F105520	PRTELDFLQRLLLDLQRRLQAGGDCHDEEHVAALELALAILQWDGTVPPPLDAQVGLGAAVESRLGPDAMCALRQWRTERRKALAPVQAPAR