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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028480 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0272186 | Ga0233383 |
| Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G16 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 174676605 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039427 | Metagenome / Metatranscriptome | 163 | Y |
| F042737 | Metagenome / Metatranscriptome | 157 | Y |
| F051611 | Metagenome | 143 | Y |
| F058575 | Metagenome / Metatranscriptome | 134 | Y |
| F066313 | Metagenome | 126 | Y |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| F082887 | Metagenome / Metatranscriptome | 113 | Y |
| F104183 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233383_1003760 | Not Available | 4018 | Open in IMG/M |
| Ga0233383_1016275 | All Organisms → Viruses → Predicted Viral | 1406 | Open in IMG/M |
| Ga0233383_1017599 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1329 | Open in IMG/M |
| Ga0233383_1034650 | Not Available | 833 | Open in IMG/M |
| Ga0233383_1041031 | Not Available | 745 | Open in IMG/M |
| Ga0233383_1051302 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri | 648 | Open in IMG/M |
| Ga0233383_1057666 | Not Available | 603 | Open in IMG/M |
| Ga0233383_1062756 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 573 | Open in IMG/M |
| Ga0233383_1064670 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 562 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233383_1003760 | Ga0233383_10037604 | F051611 | MVKDKVTKEDLMKFNVGDQKVFTLPNYGKARSAQSYANQLKKATMGTENPMEFKAVVGDPIPGSGQCSVTITRMS |
| Ga0233383_1003760 | Ga0233383_10037607 | F066313 | MKEKFQKWMRRNNMMFSAIAGETFTNAEVVYTHIGLVVFLIVLGVAGNF |
| Ga0233383_1016275 | Ga0233383_10162752 | F042737 | MKLTEKSMEVYNYVKENGGRVSIEELAAGLNRTPRSVNANVTDLCSEKKGLAMREKVKGEGEDAKDITYVVLTEAGKTFVPSED |
| Ga0233383_1017599 | Ga0233383_10175991 | F072921 | MKKKMKLSTDRKSASEGEYIEIRWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPMSNGKMTVKLIGIISGKKVTESVDVRVKGAKRAKSNAPLSSRMKMFGEKMKAKWYVFRAQMKYWWLSQKKWQKALWIALLALWFGLLFSSIGRKPEVKVSSD |
| Ga0233383_1034650 | Ga0233383_10346501 | F104183 | AIFQCIKQIIAIMTQQDFQQKAKKAAKEFANKKKVASQPETQFVKGALWAWELLTQGRAVADYEEQLRRDVCARFGIDQPEQWQELLISETATMMADRDGMQQDILTEGRLLEKFDKNMNPYKESNPLYVHLKELQRSIGMQREHLGLTNKSSKKMESPKTHDVKDDPLGEYFEGIR |
| Ga0233383_1041031 | Ga0233383_10410312 | F082887 | MEKLKTIAKYVTNILGIIGALIAGLNGVEGITIPYAVQITQSIVVVQGVIGTYLLGQKAIKNKEE |
| Ga0233383_1051302 | Ga0233383_10513022 | F039427 | MSKKTFNLVTCIVGGVQTIAVAVVTYTAPEYATAINSAIVVIGTAVIEACSQFVKSE |
| Ga0233383_1057666 | Ga0233383_10576661 | F066313 | MKQRFEKWMSRNNMMFSAMAGETFTNAEVVYTHIGLVAFLIVLGLAG |
| Ga0233383_1062756 | Ga0233383_10627561 | F058575 | MSEMSARELLEQAEELRRNCRFGEAINFYRAAADSPDCPEDIKRKSLASVELMQEINGFVNVDLMNP |
| Ga0233383_1064670 | Ga0233383_10646702 | F072921 | MKSRLILTTDRKSASEGEYIEIRWVCDACPDSLYLAIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANIKYWWLSQKKWQKALWIALLALW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |