3300028479: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D16

Overview

Basic Information

• IMG/M Taxon OID: 3300028479
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272172 | Ga0233369
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D16
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144858404
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F053537	Metagenome / Metatranscriptome	141	Y
F074001	Metagenome / Metatranscriptome	120	Y
F105520	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233369_1003921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3953
Ga0233369_1021110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1172
Ga0233369_1038442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	756
Ga0233369_1049538	Not Available	630

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233369_1003921	Ga0233369_10039213	F053537	MKYMHKAIWQADGNLVIRGNSRALLFRALDDARAELGKHGDAADPQVVHTLQALQDVLGAYDGPLPSATELLGDPARERLARNLLKG
Ga0233369_1021110	Ga0233369_10211103	F074001	MHKNSPGAQLDQVSAKTDEVQRELEVASAELGLTHGALDRHLPPAQRNGDVAWAIAQNAALERKVAQAAEDLEEVVGMLEQVKAEVAG
Ga0233369_1038442	Ga0233369_10384421	F105520	MDAKPKLDLPRTELDFLQRLLLDLQRRLQAGGDCHDEEHVAALELALAILQWDGTVPPPLDAQVGLGAAVESRLGPDAMCALRQWRTERRKALAPVQAPAR
Ga0233369_1049538	Ga0233369_10495381	F036964	MNNLIEILKMVFPGMMVAGAAGSLILNIITNPGDWPVSLQWFGAALLYTALLFRNK