Sample 3300028409

Basic Information
IMG/M Taxon OID	3300028409 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0154663 \| Ga0306889
Sample Name	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #190 (v2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300028409 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0154663 | Ga0306889

Sample Name

Saline lake microbial communities from Deep lake, Antarctica - Metagenome #190 (v2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	55617317
Sequencing Scaffolds	24
Novel Protein Genes	25
Associated Families	18

Dataset Contents

Total Genome Size

55617317

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → saline lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Hypersaline (saline)

Location Information
Location	Antarctica: Deep lake
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Antarctica: Deep lake

Coordinates

Lat. (^o)

-68.5558

Long. (^o)

78.1913

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002411	Metagenome	561	Y
F006455	Metagenome	373	Y
F007732	Metagenome	346	Y
F007954	Metagenome	342	Y
F014215	Metagenome	265	Y
F027372	Metagenome	195	Y
F030941	Metagenome	184	Y
F030943	Metagenome	184	Y
F032101	Metagenome	181	Y
F038482	Metagenome	166	Y
F044223	Metagenome	155	N
F063209	Metagenome	130	N
F066289	Metagenome	127	Y
F072828	Metagenome	121	Y
F078014	Metagenome	117	N
F079392	Metagenome	116	N
F084902	Metagenome	112	Y
F086358	Metagenome	111	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0306889_102988	Not Available	2094	Open in IMG/M
Ga0306889_108486	Not Available	896	Open in IMG/M
Ga0306889_110543	Not Available	763	Open in IMG/M
Ga0306889_111329	Not Available	723	Open in IMG/M
Ga0306889_111531	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
Ga0306889_112049	Not Available	690	Open in IMG/M
Ga0306889_112394	Not Available	675	Open in IMG/M
Ga0306889_112726	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	663	Open in IMG/M
Ga0306889_113120	Not Available	649	Open in IMG/M
Ga0306889_113285	Not Available	643	Open in IMG/M
Ga0306889_114053	Not Available	619	Open in IMG/M
Ga0306889_114356	Not Available	610	Open in IMG/M
Ga0306889_114697	Not Available	599	Open in IMG/M
Ga0306889_115080	Not Available	590	Open in IMG/M
Ga0306889_116523	Not Available	551	Open in IMG/M
Ga0306889_116813	Not Available	544	Open in IMG/M
Ga0306889_117232	Not Available	534	Open in IMG/M
Ga0306889_117329	Not Available	532	Open in IMG/M
Ga0306889_117423	Not Available	530	Open in IMG/M
Ga0306889_117859	Not Available	521	Open in IMG/M
Ga0306889_117932	Not Available	519	Open in IMG/M
Ga0306889_118191	Not Available	514	Open in IMG/M
Ga0306889_118392	Not Available	510	Open in IMG/M
Ga0306889_118834	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0306889_102988	Ga0306889_1029885	F063209	MSEAQLLKEIKQLKINQKNMEKKLDKAIGNANGQPDAEDHIEVWNDEQDLPGDIRIGKVIKEAKTGRRGVRCIQVGKVEQILGRKRTRTLEIMRELDRKHENLRYENRGGNKGSYLYYTG
Ga0306889_108486	Ga0306889_1084861	F007954	MNNQIEATEEIEQFVTKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATSEPSEPTPETIRDAWTEIATSGGLDGWRKFQSMASEYGLHRMKRPAMIDKLTDMGVMPGDDPPEDTHEQTVFNAPRTGGMTSSKAFAVAED
Ga0306889_110543	Ga0306889_1105432	F079392	MTQATPVWEYIATKHERNVTWAASALGVDRSTLHRVMNSGYVINGNLYTIKRKAK
Ga0306889_111329	Ga0306889_1113291	F014215	SIQHINAGTNRDDDPCLNIEVVGGNESDDDDTPTVNGVELDSVADVANALSHLDDPSNEGHIAVRSSEELVIIQSRGSHFGHMGELLEAQKQGHISIQPITAGTNRSGDPCLNIDFVGGDDDDTPTVNGVELDSVAGVANALSHLDDPSNAGHIAVRNSEDLVIIHSRGSYFDHMEALLEAQKQGHISIQSIAVGTNHDSDSCLSIEVVGVDE
Ga0306889_111531	Ga0306889_1115311	F030941	PAAIGLLFIFHVFVRSKNPPADTSNRINHFRLVWFALTREGLFVGLFPWLKNDEYDNVTK
Ga0306889_112049	Ga0306889_1120492	F072828	MKVNPTQMTTLTEFLATADTDNTVALAAARAFSEQVLKPFDDRMMNERTVMGLIGMQSGETFMQSLEAAPDSVMPARVKAWFKPSEAGIDVATPSAVDIIEAMAGAGAITEAESGVLKGYAYDTVTPFSRITLHDVLLT
Ga0306889_112394	Ga0306889_1123941	F027372	MIEVIASSTEALYDDYANLKLQTSSGYAPYGLAGIVVNDCVAVICGNCATDEELADNDDGSIFANSEWDYPAPACEDCQKPLNVNLIVHKSHDPELHFRLRMTEELGGFADRDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVNDIAPQLQQLAGHAPYDTTPTDIGYE
Ga0306889_112726	Ga0306889_1127261	F002411	MVIRSLLPISLETMHDPKEPVLLIALKIMRHAKLCLSVIIFLICVCWHPERMCR
Ga0306889_113120	Ga0306889_1131201	F086358	AFDWLDREIIQRQFDIVQERTYDHPSHYAREIVLKQIVTREYEDDNYDSRLRLWDELISFTRYNVEVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLRRTNNAEVDPNPDKQGENRLDVLDMTITPELRYTNLGPLIDTEWFVYNS
Ga0306889_113285	Ga0306889_1132851	F014215	RVETTMTDKNADNDSTEMTDNDSTPTVNGSELDSVVGVANAFSYLDDPSNAGYISVRNLEDLVIIWSRETHFGHMYSLLEAQKQGHISIQSITAGTNPRGDPCLKIEVVGGNESDDDDTPTVKDVELDSVVGVANAFSYLDKMYNAGHITVRSSEDLAIIQSRRTHFRYMGELLEAQKQGHISIQHISTGTNRVNDPCLNIEFVGGDE
Ga0306889_113904	Ga0306889_1139041	F044223	RKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHISLEGWTRFGRFKGDIAQSTGYGKDALFGELKSLRRNGFVSIRVLNPTDENPHSEIKVKPPAADPEQWTHHETDDRPDLFGHGVPDDNETNAAKHHLLFAIEDGDEELIGGCDLQEFGLKRVEDEHDDRLVAPIDEPNHEIEDEVDRISHGKS
Ga0306889_114053	Ga0306889_1140532	F078014	MKCVVMWLNMCCFIIERHQIRVWAVKVGFDPRQIAHTVTYMDISTSSCSLKYQLSFKARM
Ga0306889_114356	Ga0306889_1143562	F038482	MSEKLTKADELCKELAETLSQNPGTVKTTIEIPHPTLGTTIVTDDKISKMAAGELFELDRGVQARIEQDE
Ga0306889_114697	Ga0306889_1146971	F007732	MNEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIVVNDCNIVCGNCATDEELADNNNDAIFGNTEWDYPAPVCEDCQKPLNVDLLLYKSHDPELLFRLRMTEELGGFADIDCFTIEEIGAKAAERAAKIGRDYAPTDMFESDEHYEIPTDSAQYANNIA
Ga0306889_115080	Ga0306889_1150802	F006455	MNQDVKPPAGWTEIEPEFEYQRQTFQRRRDGLVVAIEREWMSSYNVVTLPENYYQDNQVIDCIEAGVEPEDAAEPAREWMEQNNRQ
Ga0306889_116523	Ga0306889_1165231	F007954	MTNQTQAGEIEQFVTKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATVEASSEPSEPTPETIREAWTKIATDEWRKFQGMAAEYGLYRMKRPAMIDTLTDMGVMPGDNPWDTEQTVFDVPRTNSMVSSKAIAV
Ga0306889_116813	Ga0306889_1168131	F032101	VLVLPRLSRSTPPRLVVLNIATLKSIRPIVPFAMSNQNGTDEIEPLVNEAANPETALCVNFNIVGDLLIGELDSWHVGICKIEKDDDDLLVYGENGHLVERIDTDVWTTSTLFDGIEAKDLAKIADTINGAIASEYDEL
Ga0306889_117232	Ga0306889_1172321	F044223	RKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHISLEGWTRFGRFKGGIAQSTGYPKDALFGELKSLRRNGFCTIRVLNPTDESPHYEIKLKPPAADPEQWTHHETDDRPDLFGHGVPDDNETDSQKHHLLFAIEDGDEDLIDEFDLEELGLKRVE
Ga0306889_117329	Ga0306889_1173291	F007732	MSDEIILSSTEALYDDYADLKLQRSSGYAPCGLAGIMVNDCDIICGNCATDEELADYDNGSIFANSEWDYPAPLCEDCQKPLNVDLFVHKSHDPELHFRLRMTEVLGGFADTDCFTIEEIGEKAAKRAAKIGRDYA
Ga0306889_117423	Ga0306889_1174232	F084902	DSAQYANNIAPQLRQLAGYEDGTGKGTYNITPTDIVYDIHREDVLPAFQEAYHTEAVKRE
Ga0306889_117859	Ga0306889_1178591	F032101	ATLKPSQPVALIAMSDQIEADEIAQFANEAANPETALCVNSAIVGDLLIGELDSWQLGICAVKTDGYNLLVCDENGQVVDRVDTDVWTTSTLAYDAEVKDLATIADMVNSAIASEYGDL
Ga0306889_117932	Ga0306889_1179321	F007732	MDEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIIVNDCNIVCGNCATDEELADNNNDAIFGSAEWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADTDCLTIEEIGAKAAERAAEIGRDYATDMFAS
Ga0306889_118191	Ga0306889_1181911	F030943	MSKEIEADEIEQLVTEAVNVEAIPSVTSGIVGDLLNGELDSWRVVICEVVKDDDDLLVCGEGGQVVERVDTDVWTTSALSGTEVKDLSKIADTINSAIAAEYGAL
Ga0306889_118392	Ga0306889_1183921	F066289	MNEIIVSSTEALYDNYADLKSQTSSGYSTYGLAGIVVNDCDIICGNCATDEELADNDNDAIFGNSEWDYPAPVCEDCQKPLNVNLIVHKSHD
Ga0306889_118834	Ga0306889_1188341	F007732	SGCNLPDGSCAKTPERRDIRPGNQIMSDEIIVSSTEALYDDYANPKSQTPSGYAPYGLAGIVVNDCDIICGDCATDEELVDNDNDAIFGSAEWDYPAPVCEDCQKPLNVDLPVYKSHDPELLFRLRMTEELGDFADTDCLTIEEIGAKAAERAATIVWLRGWGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028409: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #190 (v2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences