Sample 3300028404

Basic Information
IMG/M Taxon OID	3300028404 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0154654 \| Ga0306880
Sample Name	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #50 (v2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300028404 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0154654 | Ga0306880

Sample Name

Saline lake microbial communities from Deep lake, Antarctica - Metagenome #50 (v2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	39203907
Sequencing Scaffolds	38
Novel Protein Genes	40
Associated Families	27

Dataset Contents

Total Genome Size

39203907

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	32
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → saline lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Hypersaline (saline)

Location Information
Location	Antarctica: Deep lake
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Antarctica: Deep lake

Coordinates

Lat. (^o)

-68.5558

Long. (^o)

78.1913

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002325	Metagenome	571	Y
F003128	Metagenome	506	Y
F007732	Metagenome	346	Y
F007954	Metagenome	342	Y
F011984	Metagenome	285	Y
F014215	Metagenome	265	Y
F020827	Metagenome	222	Y
F027696	Metagenome	194	N
F030941	Metagenome	184	Y
F034413	Metagenome	175	Y
F038088	Metagenome	166	N
F039886	Metagenome	163	Y
F044223	Metagenome	155	N
F046096	Metagenome	152	N
F048679	Metagenome	148	Y
F048680	Metagenome	148	N
F051583	Metagenome	144	N
F059487	Metagenome	134	Y
F063209	Metagenome	130	N
F066289	Metagenome	127	Y
F068284	Metagenome	125	Y
F070700	Metagenome	123	N
F079392	Metagenome	116	N
F083454	Metagenome	113	N
F100063	Metagenome	103	N
F100065	Metagenome	103	N
F102170	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0306880_101783	Not Available	2652	Open in IMG/M
Ga0306880_102546	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1805	Open in IMG/M
Ga0306880_102882	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1591	Open in IMG/M
Ga0306880_102923	Not Available	1568	Open in IMG/M
Ga0306880_103473	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae	1357	Open in IMG/M
Ga0306880_103725	All Organisms → Viruses → Predicted Viral	1269	Open in IMG/M
Ga0306880_103861	Not Available	1234	Open in IMG/M
Ga0306880_104672	Not Available	1048	Open in IMG/M
Ga0306880_104912	Not Available	1010	Open in IMG/M
Ga0306880_105824	Not Available	896	Open in IMG/M
Ga0306880_106870	Not Available	786	Open in IMG/M
Ga0306880_107304	Not Available	750	Open in IMG/M
Ga0306880_107315	Not Available	749	Open in IMG/M
Ga0306880_107925	Not Available	711	Open in IMG/M
Ga0306880_108012	Not Available	706	Open in IMG/M
Ga0306880_108155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → unclassified Idiomarinaceae → Idiomarinaceae bacterium	698	Open in IMG/M
Ga0306880_108669	Not Available	666	Open in IMG/M
Ga0306880_108992	Not Available	650	Open in IMG/M
Ga0306880_109295	Not Available	637	Open in IMG/M
Ga0306880_109436	Not Available	631	Open in IMG/M
Ga0306880_109764	Not Available	617	Open in IMG/M
Ga0306880_109827	Not Available	614	Open in IMG/M
Ga0306880_109957	Not Available	608	Open in IMG/M
Ga0306880_110214	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	599	Open in IMG/M
Ga0306880_110215	Not Available	599	Open in IMG/M
Ga0306880_110775	Not Available	578	Open in IMG/M
Ga0306880_111040	Not Available	567	Open in IMG/M
Ga0306880_111594	Not Available	549	Open in IMG/M
Ga0306880_111599	Not Available	549	Open in IMG/M
Ga0306880_111766	Not Available	543	Open in IMG/M
Ga0306880_111803	Not Available	542	Open in IMG/M
Ga0306880_111923	Not Available	538	Open in IMG/M
Ga0306880_112009	Not Available	536	Open in IMG/M
Ga0306880_112473	Not Available	522	Open in IMG/M
Ga0306880_112537	Not Available	520	Open in IMG/M
Ga0306880_112722	Not Available	516	Open in IMG/M
Ga0306880_112723	Not Available	516	Open in IMG/M
Ga0306880_112884	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0306880_101783	Ga0306880_1017835	F100065	MTANIVVSKAPFLSPIREPVDAGRTVESIFGDYTGLARDHTRAFVNGYPVDDWNQEVVSGDLLTLHQVPSGLSAVA
Ga0306880_102546	Ga0306880_1025463	F003128	RRGTLRMQIQVSASEIKSSKKADDRGRVTLGSEFAGKTVTVVVLEVEDK
Ga0306880_102882	Ga0306880_1028824	F011984	MRPIICDCCQIRIDDSWNGPAIEVKVHNGVDTDVSGDYCVDCAGSVADAIRSVIEDTTGVTRRE
Ga0306880_102923	Ga0306880_1029231	F048679	MRLKVYLLLALAHYCGVQQGALQIASGLGANTLSVWKTNDRHPTAERFYKAQSALIDMADLPVEYKNLEI
Ga0306880_103473	Ga0306880_1034731	F027696	MSTTKLSTVASNLDISEHGDERVIDFDIAANTDYEIQSCVIVDEDDRVVEAVVRFGCVEERPELGIDRKILYPAWANMVSEATDVEAVEGDLSDFS
Ga0306880_103725	Ga0306880_1037251	F070700	MPDTSLATEIVTDGGEIDDRTQHITDDDIEHGTDGEAIQDINNVREALETFQRSAEETWSEHMDVIEHGQYWLVEETDDVIVLAADDPRYKEYLSPTGHDTADYHDAVIGVMHSVAKRLTDYNWGYSYPLVIAKPDEEDVT
Ga0306880_103861	Ga0306880_1038614	F034413	ADYSFLPKALQSAIRLPIYYRACAVLAEPTRAARRAKLDAEPESVRALVEAEALRLHKLRPKGLQ
Ga0306880_104672	Ga0306880_1046721	F046096	IMSCDDNMAQSIMKAASNPESVTKGKKQSESFMSYVTSRTVGAAVSVAALVVGGGAVLFAVSKAKSTSNVVDSAKTTIGEWV
Ga0306880_104912	Ga0306880_1049121	F007954	VMNNQIEATEEIEQFVTKAAKFGTASGVTVAVELEDGKVMTQRWGAVEATVEATVEATVEASSEPSEPTPETIRDAWTKIANNEWRKFQVMAGKYGLYRMKRPAMIDTLTDMGVMPGDHPSEDTDQTVFDVPRTNSMVSSKAIAVADD
Ga0306880_105824	Ga0306880_1058241	F063209	MSEAQLLKEMKQLMKEIKQLKINQKNMEKKLDKAIGNANGQPDAEDHIEVWNDEQDTPGDIRIGKVIKEAKTGRRGIRGIQVGKMEQILGRKRTRTLEIMRELDRKHENLRYENRGGNKGSYLYYTG
Ga0306880_106870	Ga0306880_1068701	F066289	MDEIIVSSTEALYDDYAKLKSQTPSGYATYGLAGIIVNDCNIVCGNCATDEELADNNNDAIFGSAEWGYPAPVCEDCQKPLNVNLIVHKSYAPLLHYRLRMTEELGGFADT
Ga0306880_106870	Ga0306880_1068702	F068284	DIDCFTIEEIGAKAAERAAGIGRDYAPTDMFESDEHYEIPTDSAKYVNDIAPQLQQLAGHAPYDTTPTDIGYEIHKEDVLPAFREAYHTEAVNL
Ga0306880_107304	Ga0306880_1073041	F048680	MNKNKHSDLDDDLDHEGINRRQFMRRVSATTLGAGAAYYGGSRVAGSPVKNGQAFIPVAIAAAVVGGAAVGYATRYVQNKYLGDDFDETAYDEAAAAEVHAEIRENALEKSYYDDSMLTNLGNVLSNSKQVAYGDARVDAIEQMNLGNSKQA
Ga0306880_107315	Ga0306880_1073151	F014215	TEEASSLEDLVIIQSRETHFGHIETLLEAEKQGHISIQHITTGTNRVGDPCLNIEVVGGNDSTETTDKDDTPTVNGVELDSVAGVADALAYLDDPWIAGDITVRTSEDLVIIHSRQRHFGHVEALLEAEKQGHISIQHISTGTNRVGDPCLSIEVVGGDESDDDDTPTVNGVELDSVAGVATACEYLDEPYNAGHIAVRNSEDLVIIHSRGACFGHMGELLEAQKQGHISIQHIAVGTNHDSDPCLSIE
Ga0306880_107327	Ga0306880_1073271	F044223	MSDNTTIGLKVSHERNARIERKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESTTTQHTPEDRRDAEIYDALLDHIPLKGWTRFGRYKGGIAQSTGYPKDALFGELKSLRRNGFVSIRVLNPTDENPHSEIKVKPPAADPEQWTHHETDDRPDLFGHGVPDDNETNAAKHHLLFAIEDGDEELIGGFDLQEFGLKRVEDEHDDRLVAPIDEPNHEIEDEVDRISHGKS
Ga0306880_107925	Ga0306880_1079251	F014215	MTDKNADNDSTEKTDKDDTPTANGVELDSVVGVANALTYLDDPYNVGDIAVRSSEDLVIIQSRGAHFGHMYSLLEAQKQGHISIQSITAATDRDGDPCLRIEVVGGDESDDDDTPTVKGVELDSVVGVANAFSYLDKMYNAGHITVRSSEDLVIIQSRRTHFRYMGPLLEAQKQGHISIQHISTGTNR
Ga0306880_108012	Ga0306880_1080121	F007954	RGSNPGRDSRWQTGGCVNIHMVKIRVARCGSNRGESNAMCRILDVSVVVQTGVSQLEDGPQHSQTLKSTPTVVHVVMNNQIEAAEEIVQFVTKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATVEATVEATVEATSEPSEPTPETIRDAWTEIATSGGLEGWRKFQSMAAEYGLHKMKRPAMIDALVELGVMPGDHPSEDTDQTVFDVPRTNSMVSSKAIAVADD
Ga0306880_108155	Ga0306880_1081551	F030941	VIALAVLCAFMALPSVLGLLVIFHVFVRSKNPPADTSNRINHFRLVWFALTREGLFVGLFPWLKNDEYDNVME
Ga0306880_108669	Ga0306880_1086691	F039886	MNTKPRKTAENHSPTVPKTMGVTVAKQQPETTMTDNNADDSTETTDKDDTPTAYGVELDSVVAVAEAFAYLDDPWIVGDITVRTSEDCSLEDTVRISEDCSLEDLVIIQSRETHFGHIETLLEAEK
Ga0306880_108992	Ga0306880_1089921	F100063	MSETCEVCGQFTGRTASFDLWIRGLDRRGEGDRIDIDVSGVSVGECCGLAVLQGPDETRVDRSYQRYLNGTSDGELRYVVMIRDEIETDSDTTQFRHPITGNCLPESIDDYV
Ga0306880_109295	Ga0306880_1092952	F059487	RMNPIDRFVDRVVIRSACPVGPCASQSWVKMRAGAVAFLATMPGLYMMNQGFETVGWIVAVANMLITINIIATRFNQRIEHGHTCGRTDIGTSSEDQQ
Ga0306880_109436	Ga0306880_1094361	F083454	MSNKTTIGLKVSHERNARIERKVDDAGYQSRQSYIRALIDDDLGGFDTTVESTTTDHTPDDRRDAEIYDALLDHIPLKGWTRFGRFKGDIAQSTGYPKDSLFGELKSLRRNG
Ga0306880_109764	Ga0306880_1097642	F051583	MTPHVPLTVGRSAPEGTRTNMDYTNPEDAANIDEPTRQQEIGLLSGLVDGNFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLVEWLNAKAALY
Ga0306880_109827	Ga0306880_1098273	F079392	YIATKHERNATWAASALGVDRSTLHRVMNSGYVINGNLYTIKRKAS
Ga0306880_109957	Ga0306880_1099572	F002325	IAFNGDGLEVTGLSVTQPNTTYVVFEYQSGFDAGRVLSGVSERQITAWALDDVDDKWRTWAGNRLNGSNDLGIQQMTAVFDGGNSIIREDGVETAVGDAGTNDLGGLSVGYDSYGYNYGGQPRNYADAYVSEIVIVNSGSVDLDFETQLLQKWGVTA
Ga0306880_110214	Ga0306880_1102142	F038088	MSQKPLTVEDLRGLINEGQAKDPLVFLESVMNGSDPRQISRLYKLVTDIHDFSNGDPDPSDWAEIVDIVLTDYKYRPVGLGESITAAKTMAEYLYAKRKQIDTNGGNNSGSDPGSNPLTEEEVE
Ga0306880_110215	Ga0306880_1102152	F048680	MRRVGCATLGAGAAYYGGSRVAGSPVQNGRAVIPVAIGAAVVGGVAVGYATRYVQNKYLGDDFDETAYDQATADEVHAEIRENALEKSYYDDSMLTNLGNVLENSKQVAYGDAR
Ga0306880_110775	Ga0306880_1107751	F002325	TYVESGINGNPAIAFDGDGLEGTGLSVTQPNTTYVVFEYRSGFDGGRVLSGVSERQLTAWPDSGQNNWLTHAEGGYLAGSNDLGIQQMTTVFDGGNSIIREDGVETAVGDVGYSDLGGLSVGYDAYDRYRGIGRFYADAYVSEIVVVNSGSVDLDFENHLLEKWGITAXKTRSRSIAI
Ga0306880_111040	Ga0306880_1110401	F003128	MQIGVSASDIKSSKKADDRGRVTLGSEFAGKTVTVAVLEVEDVDLEEPPE
Ga0306880_111594	Ga0306880_1115941	F003128	TMKIEVSASEIKSEKKADNRGRVTLGSDYAGKTVTVAVLEVEDE
Ga0306880_111599	Ga0306880_1115991	F002325	QGGFDGGRVLSGVSERQLTVWASERENINKWRTYAGGDYLAGSNDLGIQQMTAVFDGGNSIIREGGVETAVGDVGYNDLGGLSVGYDSAGYNIYDQPRNYADAYVSEIVLVNSGSVDLDFETQLLQKWGITA
Ga0306880_111766	Ga0306880_1117662	F102170	MSDDDETVIVMVNGHVYHTDETCYRITDRAREWDLDEALKAGRYECGHCQADENLGSKQHGEYLATKLSKADPDEVAPTELDRERASVSLAWFVAVWLAIMAAS
Ga0306880_111803	Ga0306880_1118031	F007732	MIEVIASSTEALYDDYANLKLQTSSGYAPYGLAGIVVNDCVAVICGNCATDEELADNDDGSIFANSEWDYPAPACEDCQKPLNVNLIVHKSHDPELHFRLRMTEELGGFADRDCLTIEEIGAKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAKYVNDIAP
Ga0306880_111923	Ga0306880_1119231	F044223	RQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHISLEGWTRFGRFKGDIAQSTGYGKDALFGELKSLRRNGFVSIRVLNPTDENPHSEIKVKPPAADPEQWTHHETDDRPDLFGHGVPDDNETNAAKHHLLFAIEDGDEELIDEFDLEELGLKRVEDEHDDRLVAPID
Ga0306880_112009	Ga0306880_1120091	F083454	MSNKTTIGLKVSHERNSRIERKVDDAGYQSRQSYIRDLIDDDLGGFDSTVESTTTQHTPEDRRDAEIYAALLDHIPLKGWTRFGRFKGEIAQVTGYGKDSLFGELKSLRRNGFCTIRVLNPT
Ga0306880_112473	Ga0306880_1124731	F002325	YVESGINGNPAIAFNGDGDGLEVAGLSVTQPNTTYVVFEYQSGFDGGRVLSGVSERQLTGWADTDLNNWRAYADDYLEGSNDLGIQQMTTVFDGGDSIIREDGVEISVGDAGTSDLGGLSVGYDSFRYNNYGTRSYADAYVSEIVLVNSGSVDLDFENQLLEKWGITA
Ga0306880_112537	Ga0306880_1125371	F007732	MSDEIIVSSTEALYDDYANLKSQTPLGYAPYGLAGIIVNDCDIICGDCATDEELANNDNGAIFGNAEWDYPAPVCEDCQKPLNVNLLVYKSHAPLLHFRLRMTEELGGFADTDCLTIE
Ga0306880_112722	Ga0306880_1127221	F014215	GVANALAYLDEPYNAGHIAVRSSEDLVIIQSRGAHFGHMYSLLQAQKQGHISIQHITAGTNRDSDPCLSIEVVGGDESDDDDTPTVNGVELDSVVGVANAFSYLDKMYDVGDIALRSSEDLVIIQSRGTHFSYMEALLQAQKQGHISIQHITAGTNRDGDSCLRIEVVGGG
Ga0306880_112723	Ga0306880_1127231	F002325	GLEVTGLSVTQPNTTYVVFEYQSDFDGGRVLSGVSERQKVAWADKVQDNWRTKAGEILEGSNDLGIQLMTAAFDGANSIIRENGVETSVGYAGTNGLGGLSVGYDAYGYNIGEGSKFYADAYVSEIVIVNSGSVDLDFENHLLEKWGITAXKTRCGSLSDNASETGITEI
Ga0306880_112884	Ga0306880_1128841	F020827	MNINDITGWYEIGQRWKLWKDGQLRDFYIDHIHVFESDDSDTIEVEHYLSDGTMITKLTVTAFDVVPV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028404: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #50 (v2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences