NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028351

3300028351: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #192 (v2)



Overview

Basic Information
IMG/M Taxon OID3300028351 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0154664 | Ga0306890
Sample NameSaline lake microbial communities from Deep lake, Antarctica - Metagenome #192 (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size46674725
Sequencing Scaffolds40
Novel Protein Genes41
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Haloarcula → unclassified Haloarcula → Haloarcula sp. Atlit-7R1
Not Available28
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense2
All Organisms → Viruses1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → Halorubrum Tailed Virus 71

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Deep lake
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002325Metagenome571Y
F002703Metagenome536Y
F007732Metagenome346Y
F007954Metagenome342Y
F012537Metagenome280Y
F014215Metagenome265Y
F020827Metagenome222Y
F027696Metagenome194N
F030941Metagenome184Y
F030942Metagenome184N
F032101Metagenome181Y
F044223Metagenome155N
F047394Metagenome150N
F048680Metagenome148N
F054455Metagenome140N
F057005Metagenome137Y
F068284Metagenome125Y
F070700Metagenome123N
F076657Metagenome118N
F084898Metagenome112N
F084902Metagenome112Y
F086358Metagenome111N
F100063Metagenome103N
F102169Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0306890_102423All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria2582Open in IMG/M
Ga0306890_103832All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Haloarcula → unclassified Haloarcula → Haloarcula sp. Atlit-7R1710Open in IMG/M
Ga0306890_104587Not Available1466Open in IMG/M
Ga0306890_105154Not Available1321Open in IMG/M
Ga0306890_105828All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1195Open in IMG/M
Ga0306890_105991All Organisms → Viruses → Predicted Viral1169Open in IMG/M
Ga0306890_106349All Organisms → Viruses → Predicted Viral1117Open in IMG/M
Ga0306890_107812Not Available949Open in IMG/M
Ga0306890_107874Not Available943Open in IMG/M
Ga0306890_108252Not Available905Open in IMG/M
Ga0306890_109610All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense795Open in IMG/M
Ga0306890_109726Not Available787Open in IMG/M
Ga0306890_109886Not Available776Open in IMG/M
Ga0306890_110368Not Available746Open in IMG/M
Ga0306890_110593All Organisms → Viruses733Open in IMG/M
Ga0306890_111952Not Available668Open in IMG/M
Ga0306890_112152Not Available659Open in IMG/M
Ga0306890_112169Not Available658Open in IMG/M
Ga0306890_112559Not Available643Open in IMG/M
Ga0306890_112987Not Available625Open in IMG/M
Ga0306890_113133All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales619Open in IMG/M
Ga0306890_113421Not Available608Open in IMG/M
Ga0306890_113621Not Available601Open in IMG/M
Ga0306890_114083All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales583Open in IMG/M
Ga0306890_114169Not Available580Open in IMG/M
Ga0306890_114405All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales572Open in IMG/M
Ga0306890_114456Not Available570Open in IMG/M
Ga0306890_114563Not Available567Open in IMG/M
Ga0306890_114604Not Available566Open in IMG/M
Ga0306890_114864Not Available557Open in IMG/M
Ga0306890_114940Not Available554Open in IMG/M
Ga0306890_115148Not Available548Open in IMG/M
Ga0306890_115212Not Available546Open in IMG/M
Ga0306890_115321Not Available543Open in IMG/M
Ga0306890_115452Not Available539Open in IMG/M
Ga0306890_115608Not Available535Open in IMG/M
Ga0306890_115790All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum texcoconense530Open in IMG/M
Ga0306890_115867Not Available528Open in IMG/M
Ga0306890_115971Not Available525Open in IMG/M
Ga0306890_116573All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus → Halorubrum Tailed Virus 7510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0306890_102423Ga0306890_1024233F027696MSTTKLSTVASNLDISEHGDERVIDFDIAANTDYEIQSCVIVDEDDRVVEAVVRFGCVEERPELGIDRKILYPAWVNMVSEATNVEAVEGDLSDFSHIVPHLRVCRENVEKYGLETLSLDAFVTVVADLADLTEDILRGDDKTIDSQIDAYL
Ga0306890_103832Ga0306890_1038322F047394MTANTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTIARLVGTVVRLGARDEYRFETIVRVAQQHIDEECGGVDR
Ga0306890_104587Ga0306890_1045872F076657MLWDFYQNSKVEVTSKVFPGARADKHTSTETNEEFTFNNIPVPEGSKISVYPASDNTGSLYFIDPKTGTKAPLKSGKAFAWTNFQNGTFELSDDSDRAYAIAEVDE
Ga0306890_105154Ga0306890_1051543F007732MDEIIVSSTEALYEDYADLKSQTPSGYATYGLAGIVVNDCNIVCGNCATDEELADNDNDAIFGNSEWDYPAPVCEDCQKPLNVDLLVYKSHDPELLFRLRMTEELGGFADTDCLTIEEIGAKAAERAGEIGREYAPTDMF
Ga0306890_105391Ga0306890_1053912F044223MSNKTTIGLKVSHERNARIQRKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESATTQHTPEDRRDAEIYDALLDHISLEGWTRFGRFKGGIAQSTGYPKDALFGELKSLRRNGFCTIRVLNPTDESPHYEIKLKPPAADPEQWTHHETDDRPDPFAHGVPHNNETNAEKHQLLFAIEDGDEELIDECDLQEFGLKRVEDEHDDRLVAPIDEPNHEIEDEVDRISHGTPNSHIETPWGGRDD
Ga0306890_105828Ga0306890_1058282F102169MAGVINNTQRQFNLKILSKAGERVTVRIVPGFNVVDDKHWESFVSKDGKEVDAYVSELKEQGKLTFGKTQDDQELESEVSKSKSKSQAMPKDKK
Ga0306890_105991Ga0306890_1059911F057005DYPAPVCEDCQKPLNVDLLVYKSYDPELHFRLRMTEELGGFADTDCFTIEEIGEKAAKRAAKIGRDYAPTDVFESDEHYEIPTDSAQYANNIAPQLRQLSGYEDGTGKGTYNITPTDIVYDIHREDVLPAFQEAYHTEAVKREI
Ga0306890_106349Ga0306890_1063491F070700EIDDRTQHINDDDIKHGTDGGSIQDINKVREALETFQQSAEETWSEHMEGIEQGHYRIVEETDDVIVLAADDELYKHYLSPTGHDTTDFHAAVSGVMHSVAKRLTAYKWDYDYPLVIAKPDDQPKESD
Ga0306890_107812Ga0306890_1078121F054455ISKRYDPMRLCYGWWAASYREQSEKQLGALYDVRATSAFYAGFQRGTDSP
Ga0306890_107874Ga0306890_1078742F086358AVYSDAAFTVLLLMVLQWAEESIGSPNDKGPERYKRAVIAETNHLAFDWLDREIIQRQFDIVQERTYDHPSHYAREIVLKQIVTGEYEDDNYDSRLRLWDELISFTRYTVKVEYEITEPDGTCHERSHQGLYWHQSQTKLHNQRLDTLRRTNNAEVDPNPDKQGENRLDVLDMTITPELRYTNLGPLIDTEWFVYNS
Ga0306890_108252Ga0306890_1082522F086358AAVNSDAAFTVLLLMVLQWAEESIGPPNDKGPERYKRAVIAETNHLAFDWLDREIIQRQFDIVQERTYDHPSHYAREIALKQIVTREYKVDNYDSRLRLWDELISFTRYTVKVEYEITEPDGTCHERSHQGLYWHQSQTKLNNQRLGTLRRTNNAEVDSNPDKQGENRLDVLDMTITPELRYTNLEPLIDTEWLVYSL
Ga0306890_109610Ga0306890_1096101F002325MVLNATQRAVLSSGQSRIAIPDNTVAHYDASQLSLNDGDTVSVWPDEQGDYDLDTQTGSPTYVESGINGNPAIAFNGDGLEVTGLSVTQPNTTYVVFEYQSGFDGGRVLSGVSKRQITPEADQSSNRWSIHGGQGLVFGTQDINIQQMTAVFDGANSIIREDGVEIAVGDAGTNYLGGLSVGYGARGYYDYGEGRHYADAYVSEIVLVNSGSVDLDFENQLLEKWGITA
Ga0306890_109726Ga0306890_1097261F007954PTVVHVVMNNQIEATEEIEQFVTKAAKFGTASGVTVAVELEDGKVMTQRWGADEATVEATVEATVEASSEPSEPTPETIRDAWTEIANNEWRKFQGMAGGYGLYRMKRPAMIDALVELGVMPGDHPSEDTEQSVFDAPRTGGMTSSKAIAVADD
Ga0306890_109886Ga0306890_1098861F020827TVKHDIVGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTAFDVLPVVKNIEPVEKPDHL
Ga0306890_110368Ga0306890_1103681F100063MSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTSDGELRYVVMIRDEIETDSDTDTVQLHPITGNYLPESIDGYVFGKID
Ga0306890_110593Ga0306890_1105933F030941LCSLMLLPAAIGLLFIFHVFVRSKNPPADTSNRINHFRLVWFALTREGLFVGLFPWLKNDEYDNVTKE
Ga0306890_111952Ga0306890_1119521F014215MTDKNADNDSTEMTDNDSTPTVNGSELDSGVGVANAFAYLDDPCNVGNIDVRGSEDLVIIQSRGAHFGHMYSLLEAQKQGHISIQSITAATDRDGDPCLRIEVVGGDESDDDDTPTVKGVELDSVVGVANAFSYLDKMYNAGHITVRSSEDLVIIQSRRTHFRYMGPLLEAQKQGHISIQHISTGTNRVN
Ga0306890_112152Ga0306890_1121521F032101IHELDDPRSRRSNLLAIVTLKSIRPIVPFAMSNQIEDDEIEPLVNEAANPETALCVNFNIVGDLLIEELDSWHLGICEVVKDDDDLLVCGENGQVVERVDTDVWTTSTLFDGIEVKDLAEIADTINSAIAAEYGEL
Ga0306890_112169Ga0306890_1121691F100063MSETCEVCGQFTGQTASFDLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGLLQRPARRVDRSYQRYLNGTPDGELRYVVMIRDEIETDSDTTQFRHPITGNYLPE
Ga0306890_112559Ga0306890_1125591F084902PYDSTPTDIGYHIHKEDVLPAFREAYHSEAVNREI
Ga0306890_112987Ga0306890_1129871F007732MSDDTQTRRQRTEDLTNEIIVSSTEALYDDYANLKSQTPSGYAPFGLAGIVINDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCQKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAEIGRDYAPTDMFESDEHYEIPTDSAQYVND
Ga0306890_113133Ga0306890_1131331F027696MSTTKLSTVASNLDITEHGDERVIDFDIGANTDYEIQSCVIVDEDDRVVEAVVRFGRVEERPELGIDRKILYPAWANMVSEATDVEAVEGDLSDFSHIVPHLRVHRENVEKYGLETLSLDAFVTVVADLADLTEDILRGDDKTIDSQ
Ga0306890_113421Ga0306890_1134211F070700TQHITDDDIEHGTDGGAIQDINKVREALETFQQSAEDTWSEHMDGIEQGHYCLVDETDDVIVLAADDALYKHYLSPTGHDTTDYHYAVSGVMHSVAKRLTAYNWGYSYPLVIAKPDDQPKEDVTAVIEVPTEESD
Ga0306890_113621Ga0306890_1136211F012537YGDARVAAIEQMNLGNTEQDAIDAAVGVIGDFFATQQENLLEHYTFQAENLFRQVNTGANTSGLTYEDIFYSPDINNGYGAAFAYLGSGTGSKTMVDGTNYAYPTLKYFYPKSDGSESYMQTASISDGLRVQVKPVSTGSTETFFDISRFDDTLSEISTKHSETVSEITNFINTVYPDYQAGDISLEDIVRPSELAAKAS
Ga0306890_114083Ga0306890_1140831F027696MSTTKLSTVASELDICELGDERVIDFDIAANTDYEIQSCVIVDEDDRVIEAVVRFGRVEERPELGIDKSILYPAWANMVSDATNLEAVEGDLSDFSHIVPHLRVRRENVEKYGLETLSLDAFVTVV
Ga0306890_114169Ga0306890_1141691F014215LSYLDDPYNAGYISVRSSEDLVIIQSRGAHFGHMYSLLEAQKQGHISIQHINAGTNRDDDPCLNIEVVGGNESDDDDTPTVNGVELDSVADVANALSHLDDPSNEGHIAVRSSEELVIIQSRGSHFGHMGELLEAQKQGHISIQPITAGTNRSGDPCLNIDFVGGDDDDTPTVNGVELDSVAGVANAFSYLDK
Ga0306890_114405Ga0306890_1144051F027696MPTTKLSTVASELDICELGGERVIDFDLAANTDYEIQSCVIVDEDNRVIESVVRFGRVEERPELGIDKSILYPAWANMVSEATNLEAVEGDLSDFSHIVPHLRVRREN
Ga0306890_114456Ga0306890_1144561F048680RRQFMHRLGATTLGAGAAYYGGSQYAGSPVQNGQAVIPVAIGAAVVGGVAVGYATRYVADKYLGDDFDETAYDQATADEVHAEIIENGKEKAYYDDSMLTNLGNVLSNSKQVAYGDARVDAIEQMNLGNSKQAAIDAAVATVDEFFATQQENLLEHYSFQVDNLLRQVTTINNTTGLSISDVFNTDINDS
Ga0306890_114563Ga0306890_1145631F002703EMSTASLSDKLTHAKRESKALKAQLQASKLKAEELLAAFDKSVYKPEVIARRNMFKRARDKYNER
Ga0306890_114604Ga0306890_1146041F084898VGALYIICSMTKQNVKYKNSKFKRVTQNDIVSTLETLHGIGQDTAQDVVSLVDARDYKDLLNDDRTDLKSDVKRELLKSQINRESVFAVLLYQAQKNDGEEVNLYKKGDSI
Ga0306890_114864Ga0306890_1148642F030942AVLKDENDRIVQIQKNGEIVWNDEDYVQRPKIGEPTAQMLRDAETIQDIKQYLARIHKIDLRNGSEXATQQK
Ga0306890_114940Ga0306890_1149401F007954RILDVSVVVQTGVSQLEDGPQHSQTLKSTPTFVHVVMNNQIETAEEIEQFVTKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATVEATVEATVEATSEPSEPTPETIRDAWTKIATGGGLEGWRKFQSMAAEYGLHKMKRPAMIDALVELGVMPGDHPSEDTEQSVFDAPRTNSMVSSKAIAV
Ga0306890_115148Ga0306890_1151481F070700TEIRTDGGEIDDRTQHITDDDIEHGTDGGAIQDINKVREALETFQRSAEETWSEHMDGIEQGHYWLVEETDDVIVLAADDVRYNEYLSPTGHDTAYYHYAVSGVMHSVAKRLTAYNWGYSYPLVIAKPDEEDVTWDNR
Ga0306890_115212Ga0306890_1152121F007954NVETLKSTPTFAPVVMTNQIQAGEIAQFVNKAAKFGAASGVTVAVELEDGKVMTQRWGAVEATVEATVEATSEPSEPTPETIRDAWAEIATGGGLDGWRKFQSMAAEYGLHKMKRPAMIDALVELGVMPGDHPSEDTDQTVFAAPRTNSMVSSKAIAVADD
Ga0306890_115321Ga0306890_1153212F002325FEYQGGFDGGRVLSGVSERQLTVWASGRENINKWRTYAGGDYPAGSNDLGIQQMTAVFDGGNSIIREGGVETAVGDVGYNDLGGLSVGYDSAGYNIYDQPRNYADAYVSEIVLVNSGSVDLDFETQLLQKWGITA
Ga0306890_115452Ga0306890_1154522F068284GEKAAERAAEIGRDYAPTDVFESDEHYEIPTDSAQYVNDIAPQLQQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYHSEAINREI
Ga0306890_115608Ga0306890_1156081F007954KSTPTFVHVVMNNQIEATEEIEQFVTKAAKFGTASGVTVAVELEDGKVMTQRWGAVEATVEATVEATVEASSEPSEPTPETIRDAWTEIANNEWRKFQVMAGKYGLYRMKRPAMIDTLTDMGVMPGDHPSEDTEQSVFDAPRTNSMVSSKAIAVADD
Ga0306890_115790Ga0306890_1157901F002325DIQTGSPTYVESGINGNPAIAFDGDGLEVTGLSVTQPNTTYLVFESHSGWDDSRVLSGVSERQLIWPSPRNNINKWRTYAGDHLAGSNDLGIQQMTAVFDGANSIIREDGVETAVGDTGTNDLGGLSVGYDSWGYNYNDGENRNYADAYVSEIVLVNSGSVDLDFETQLLEKWGIT
Ga0306890_115867Ga0306890_1158671F002325YVESGINGNPAIAFGGDGLEGTGLSVTQPNTTYVVFEYRSGFDGGRVLSGVSERQLTAWPDSGQNNWLTHAEGGYLAGSNDLGIQQMTTVFDGGNSIIREDGVETAVGDVGYSDLGGLSVGYDAYDRYRGIGRFYADAYVSEIVIVNSGSVDLDFENHLLEKWGITA
Ga0306890_115971Ga0306890_1159711F044223MSNKTTIGLKVSHERNSRIERKVDDAGYQSRQSYIRDLIDDDLGGFDTTVESVTTQHTPEDRRDAEIYAALLDHIPLKGWTRFGRFKGDVAQSTGYGKDALFGELKSLRRNGFCTIRVLNPTDENPHYEVKVKPPAADPEQWTHHESDNRPDLF
Ga0306890_116573Ga0306890_1165731F007954SGVTVAVELEDGKVMTQRWGAVEATVEATSETIREAWAKIATDEWTKFQSMAAEFGVHNMTRTAMVDTLAELGVMPGDKPSEDTEQTVFAAPRTGGMTSSKAIAVADD

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