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Sample 3300028263
3300028263: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 2, Chloramphenicol (External Submission)
Overview
Basic Information
IMG/M Taxon OID 3300028263 Open in IMG/M GOLD Reference Gs0118397 | Gp0242245 | Ga0302333 Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 2, Chloramphenicol (External Submission) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 192972859 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 1 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4149 Long. (o ) -119.841 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F046107 Metagenome / Metatranscriptome 151 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0302333_1003262 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 6502 Open in IMG/M Ga0302333_1046440 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 761 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0302333_1003262 Ga0302333_10032621 F046107 MEIIEKMKLEIIHILKKLENTMYFSKLYYAGIFSFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKP Ga0302333_1046440 Ga0302333_10464401 F046107 EITMYFGKLYYAGIFPFLSNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDNPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIAT
