3300028254: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3U

Overview

Basic Information

• IMG/M Taxon OID: 3300028254
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133511 | Gp0294657 | Ga0256370
• Sample Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3U
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31124011
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extreme Environments Viral Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → brine
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023447	Metagenome / Metatranscriptome	210	Y
F023593	Metagenome / Metatranscriptome	209	N
F052606	Metagenome	142	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256370_111874	Not Available	661
Ga0256370_117603	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256370_110480	Ga0256370_1104802	F052606	KPILLGQGDQISQFGNYTLDTYAVDPIDPFYYIANLTYLGGNGIIAPQGTQYTLIHFDITSSGDVNLKQNFGSSLQWVINNTTGKAEPSVTLTDNSNPPEEIKGCITYTNATTITVDFDKAISGSSILN
Ga0256370_111874	Ga0256370_1118741	F023593	MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYK
Ga0256370_117603	Ga0256370_1176033	F023447	RRLMAQVGNAKFGMALANKNGFLNADGSLSAKGIARNGMTAEGRAIDRAGGTGVYNASTNSVTQY