3300028235: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2, Chloramphenicol (External Submission)

Overview

Basic Information

• IMG/M Taxon OID: 3300028235
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0242246 | Ga0302334
• Sample Name: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2, Chloramphenicol (External Submission)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191910112
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046107	Metagenome / Metatranscriptome	151	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0302334_1029522	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1711
Ga0302334_1030830	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1633
Ga0302334_1035194	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	1389
Ga0302334_1045656	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	963
Ga0302334_1067575	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	551
Ga0302334_1069318	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0302334_1029522	Ga0302334_10295223	F046107	MYFGKLYYSGIFPFLTNKKEIKPKSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVLSLVIWSTYQIIA
Ga0302334_1030830	Ga0302334_10308301	F046107	MLYXNFPFLTNKKVIKPRSNIFKIDSVVSVKLSPDSSFIELLGRDSPFVEIDDDPVLSLFLISTTSTLLVKFGNLEYLSNNSSNELLMIGI
Ga0302334_1035194	Ga0302334_10351941	F046107	MYFGKLYYAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISMTSTLLDKFGILQYLSNNSSNELLMIGIALV
Ga0302334_1045656	Ga0302334_10456561	F046107	MYFGKLYYTGIFPFLTDKKEIKPRSIIFKIDSVVSTKISPDSSFIELLGLDSSFVEIDEDPVLSLCLISTTSTLLVKFGILQYLSKNSSNELLMIGIALVKNSAKPTIFGT
Ga0302334_1067575	Ga0302334_10675751	F046107	MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDALVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFWNW
Ga0302334_1069318	Ga0302334_10693181	F046107	NKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGRDSPFVEIDDDPVLSLCLISTTSTFLDKFGNLQYLSNNSSNELLMIGIA