3300028183: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0764-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028183
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296287 | Ga0256911
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0764-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 282844996
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
Not Available	5
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004023	Metagenome / Metatranscriptome	456	Y
F005470	Metagenome / Metatranscriptome	399	Y
F031726	Metagenome / Metatranscriptome	181	N
F057456	Metagenome / Metatranscriptome	136	N
F071833	Metagenome / Metatranscriptome	121	Y
F104141	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256911_1006151	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	3574
Ga0256911_1060595	Not Available	1047
Ga0256911_1071527	All Organisms → cellular organisms → Eukaryota	942
Ga0256911_1126867	Not Available	644
Ga0256911_1147518	Not Available	580
Ga0256911_1172818	Not Available	520
Ga0256911_1181771	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256911_1006151	Ga0256911_10061512	F004023	LLLILCILFFLFHGKVYXXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNEATYDGLEPEMSWXDEALSNELGTFIEALIVLNIICWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAWLIVCPHHKTGIFGLIFLFFSLFHQPTLHGVNESGFFYKRRLLFTINRVKQKKFL
Ga0256911_1060595	Ga0256911_10605951	F057456	PSVAFPIIQDLSLLCLVILCPAYATVRLVGGQTVKQDLAIKLGKYHT
Ga0256911_1071527	Ga0256911_10715271	F104141	MQSLNILPSLLQQGHQEIDGHVDVLSEFFFSHGGDTDGGTHTEDLLQLESDGGFNFLELFFDLFVFTDSDGELADLVKGVTHKLGDLLHQGFGGEEDIERLSPLLDQFLILVELLGTIDIDATNIDLLGLVAMDGSTDKTDLSVGGGDVGESDRAVESLILFGVVVSQTNLEFNGFGELSLLSASQHVGDGLLKGFGTDLATGEGKRGGEEGSLLPHGANLKLKKF
Ga0256911_1126867	Ga0256911_11268671	F071833	INIKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL
Ga0256911_1147518	Ga0256911_11475181	F031726	HLPWPIAVLLATVVLLLAAGLTAGGVGLPGADLPTLAPLAPGWVPEPGTAPRPRTWSEPGNNRLEVWEKIERDAALVIFGEEMTDAERGRGIKALALALAMNDLELSRTYTDPLLAELRQELTRQLGGEAREVLADLDERALVRALYQARTGRHSPLMIGSFRAEVGFATYRQWMTTITESRDNRREERQTLS
Ga0256911_1172818	Ga0256911_11728181	F005470	SLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEA
Ga0256911_1181771	Ga0256911_11817711	F071833	NIKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRKEENERFANELKDTFSQL