3300028163: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0743-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028163
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296281 | Ga0256905
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0743-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103753902
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034478	Metagenome / Metatranscriptome	174	Y
F035602	Metagenome / Metatranscriptome	171	Y
F047414	Metagenome / Metatranscriptome	149	Y
F071833	Metagenome / Metatranscriptome	121	Y
F075510	Metagenome / Metatranscriptome	118	N
F096377	Metagenome / Metatranscriptome	104	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256905_1014712	Not Available	1360
Ga0256905_1029876	Not Available	922
Ga0256905_1031655	Not Available	888
Ga0256905_1032737	Not Available	869
Ga0256905_1035226	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	829
Ga0256905_1041089	Not Available	749
Ga0256905_1053064	Not Available	627
Ga0256905_1054672	Not Available	614
Ga0256905_1064875	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256905_1014712	Ga0256905_10147121	F035602	MSVSNEIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSRFRHILIRKQALTKGQQPFQEEVDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQK
Ga0256905_1029876	Ga0256905_10298761	F034478	PKHLRVLYSSKMEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256905_1031655	Ga0256905_10316551	F096377	DSKHATNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256905_1032737	Ga0256905_10327371	F071833	LINKQTYNKKNTSFLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFERVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDIDACRKEENHRFATELKETFSQL
Ga0256905_1035226	Ga0256905_10352261	F075510	LTIAANIMHTFFLFHGKVYXXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNEATYDGLEPEMSWXDEALSNELGTFIEALIVLNIICWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAWLIVCPHHKTGIFGLIFLFFSLFHQPTLHGVNESGFFYKRRLLFTINRVKQKNFYKQSHLNLEMNLFFQTTYALFIMCALYTNTFLPYGRFYNRLGGNIGMLSAYFYVFLYLGITSLRRPYWLELYFYFIYNR
Ga0256905_1041089	Ga0256905_10410892	F047414	FSGFTPRYFSNVPHMQDTNKTFGPDDFLLRPSPTHMDIDVNARFEKAVENMKMELRNNPTQHLGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF
Ga0256905_1053064	Ga0256905_10530641	F071833	KQSNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRKEENERFANELKETFSQL
Ga0256905_1054672	Ga0256905_10546721	F096377	PSIDSKHATNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTMDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256905_1064875	Ga0256905_10648751	F098404	ETFESNGFVSIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGFDHLNVYELQRFDKGKAYEVIHDEKKPICHTKSLTGKMPQLWDWVEKADFVRNFTSAGTLYDLWSYKTAGITLEVGVPQAHPDILAYFGRFSAGNEFSYYVETWKNIKPHSTWFEIPRECHLGPK