3300028160: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0688-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028160
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296276 | Ga0256900
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0688-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187176728
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Tardigrada → Eutardigrada → Parachela → Hypsibioidea → Hypsibiidae → Hypsibius → Hypsibius dujardini	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001291	Metagenome / Metatranscriptome	729	Y
F005470	Metagenome / Metatranscriptome	399	Y
F009381	Metagenome / Metatranscriptome	318	Y
F010442	Metagenome / Metatranscriptome	303	Y
F015430	Metagenome / Metatranscriptome	254	Y
F023018	Metagenome / Metatranscriptome	211	Y
F046789	Metagenome / Metatranscriptome	150	Y
F047414	Metagenome / Metatranscriptome	149	Y
F071833	Metagenome / Metatranscriptome	121	Y
F084943	Metagenome / Metatranscriptome	111	N
F096377	Metagenome / Metatranscriptome	104	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256900_1034170	Not Available	1173
Ga0256900_1067164	Not Available	722
Ga0256900_1068180	Not Available	714
Ga0256900_1068553	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	711
Ga0256900_1078811	Not Available	642
Ga0256900_1079786	Not Available	636
Ga0256900_1081977	Not Available	624
Ga0256900_1082539	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Tardigrada → Eutardigrada → Parachela → Hypsibioidea → Hypsibiidae → Hypsibius → Hypsibius dujardini	621
Ga0256900_1085760	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Tardigrada → Eutardigrada → Parachela → Hypsibioidea → Hypsibiidae → Hypsibius → Hypsibius dujardini	604
Ga0256900_1088854	Not Available	589
Ga0256900_1090719	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Peloderinae → Caenorhabditis → Caenorhabditis elegans	581
Ga0256900_1099367	Not Available	545
Ga0256900_1104020	Not Available	528
Ga0256900_1107760	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256900_1028216	Ga0256900_10282161	F023018	MQIRSIVLCLMAASAALAFPNPQDSAPSGGCPGGYAEGAEIERGRLVYVCQGGKVVPKACIAEDLSKVAIGSNFDNKHYRRKCVASGDDLSFDATGCLKNGQEHKAGETFDDGSNFYTCKQNTPGTEPLLTVSNEGCVDSGKRVPKKEKVNKDDAVYQCQETVNDGSKLVQVGCVKDGKQYAAGDAFEVGKYWFNCTQTGREKVVAKPAGCVANGKRLNDGDRYFDAGVAYECNIDGDKTSVRVMGCVQDDGGSQVERRLGCTWVEGQEPFQYEWACQNDAATNSAKKVQVRCNYKIGGGVYNIEPGCYRAVDKDFAGCINDGGKLKLQSFQGQDAEKSAQGAGLHAC
Ga0256900_1034170	Ga0256900_10341701	F010442	MMHSSFFASLLVAALASTIFADTTSSGNRQCPGGYDNGKQMNIGRYWYECRDGQVIPKGCLTPDDSRIDIDGTFDTNDYRMQCVMGQDGFLSLTYKACMHKGSEHDVGAQWDNGVAYFTCVKEGSNVRVITLGCVDQGKQMKLDDRVAKGDFIFQCKEATDGTPKMNKVGCMQEGRKYNIGETFEGPKWWYTCTDSGAKVVGCMYQGHRLVDGDHFTEGDMMYSCRVRADKTFFEPFACLQREENGASIERKVGCFWVEGQGSNAFEYTCKPDNNNLISKVQVKCVYRASQGNFKLEPGCVQQAGDIAVGCLQDSSSGKLTIQTYSPDQMGSLPGLHKC
Ga0256900_1067164	Ga0256900_10671641	F009381	MKLILILAFAFTASAMPEDRFKRDIQGIRDSCPGRCVMQDKYREWFTQMLPKAREFGKQLAEGDSQPVVPTLHPEKWDQYCTEIEAIKTCIGNCNDPGDAEKKTKAEAVLNAGKDIVCDTEIKGKFPCLQEVAKVPSQACNDQCNQYKAPIMEAYNQYKQTGTRDWDRAKNAGKNVCLLINCRLKCRKADIETKCGADGYAAAKKLVKELAVLGQTTHAQFR
Ga0256900_1068180	Ga0256900_10681801	F001291	MQALLFVLASVVASTLAAPAPACIPDQQKFYWKAPCDGQSFTNRISVSDVKATQGGKTVDEQGGMDISVNLDLVAQISDQYGEIQKPLVDIGILEYSKNLLGKCEWKKVPTLGILDNIDSCKIVKNCHLTGSPTSLDASVSIKDIAGPLYAGINTNTYYGLTMTFKDDKNPVMCVYSQDIVIKK
Ga0256900_1068553	Ga0256900_10685531	F098404	SGGLLFQSSDFTHTAMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKNNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK
Ga0256900_1078811	Ga0256900_10788111	F071833	IKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL
Ga0256900_1079786	Ga0256900_10797861	F096377	DSKHATNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKSIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256900_1081977	Ga0256900_10819771	F005470	SISTNMSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDGELNKE
Ga0256900_1082539	Ga0256900_10825391	F046789	MATSTVILLALVMVGCSMAQDPSSILEWAKLLKTANDLGMSMLSDAKDMNIMSYPCHWTRKAGWYRWKLNYDGKIACSTIGQVYSHNHCQSKGCAWKEPFMLLIKDFIINNRAPKDGLVAAIQGSDLSAQEKQDLLKLAGAGR
Ga0256900_1085760	Ga0256900_10857601	F046789	AELVFENFLVEDSRMATSTIILLSLLMVGCSTAQDPTSILDWAKLLKTANDLGMSLLSDAKDMTILSYPCHWTRKAGWYRWQLNYDGKIACSTIGQEYSHNHCKSKGCAWKEPFMLLIKDFIINNRAPKDGLVAAIQGSDLSPQEKQDLLNLAGAGR
Ga0256900_1088854	Ga0256900_10888541	F001291	AAPTPTCVPPQTQFIWKVPCDGQSFTNRIAVTNVTGTQQGKPIDQLGGLDVSIPLDLVATINDQYGQISKPLIDVSIQEYSKSLFGSCQWKKMPTLGLLDNLDSCKMVPNCHLTGSPTSLPASIDIKSIAGPLYAGLNVNTYYGLSLTFKDDKTPVLCVYAQGLVLKK
Ga0256900_1090719	Ga0256900_10907191	F015430	MFSALILAATLALALADTPCTPEQTKIYWKAPCDGQTFENKIVPLNVTVMQDGKLVDDRGGLDLEIAINIVSEIKNNYGQTTKPLVDLAIYEYSKPLFGGDCSWKALPTFGLLSNLDACTMIENCHMTGLPTTLKASVDVKTIAGPLLHLVTKDAYYGLTLTFKDDKTPTVCVYIQDRV
Ga0256900_1099367	Ga0256900_10993671	F084943	MKFVLVLAALGFLAYADASCVAARGHVICPDKHQKHDGKIVTIRLVDGERELDEGYASKNGFFAVYGCTSGGRGGFEPQLHIISKCKGDLNSRIRYNLPRVTGQQAEYNISDLINLKGYHQREDTHSGQIHEPCVVN
Ga0256900_1104020	Ga0256900_11040201	F047414	MLSPLFSSNTHNGGFFSGFTPRYFSNVPHMQDTNKTFGPDDFLLRPSPTHMDIDVNARFEKAVENMKMELRNNPTQHLGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF
Ga0256900_1107760	Ga0256900_11077601	F096377	NNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE