3300028121: Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - CBIW

Overview

Basic Information

• IMG/M Taxon OID: 3300028121
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133511 | Gp0294656 | Ga0256369
• Sample Name: Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - CBIW
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16890292
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extreme Environments Viral Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → area of sea ice → brine
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2944
  • Long. (^o): -156.7154
  • Alt. (m): N/A
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017294	Metagenome / Metatranscriptome	241	Y
F077781	Metagenome / Metatranscriptome	117	N
F091749	Metagenome / Metatranscriptome	107	Y
F099974	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256369_100021	Not Available	24130
Ga0256369_100048	Not Available	10724
Ga0256369_100237	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3493
Ga0256369_103508	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	940
Ga0256369_104891	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	780

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256369_100021	Ga0256369_10002113	F099974	MGAERKKLATVSYVTDTDVSYYEIGETEGSFQEEELKDYIKSFGHEKLCSQLAFMQFQIWKTLRKINGENNNEQAKSCVKE
Ga0256369_100048	Ga0256369_1000485	F099974	MGAERKKLATVSYVTDTDVSYYEIGEAEGSFQEEELKDYIKSFGHEKLCSQLAYMQFQIWDALRKINGENNNEQAKSCVKE
Ga0256369_100237	Ga0256369_1002372	F091749	MIKTDENYNAQSWELEIDCKNKEYLDEIVGAVLKYGMISFEVEVGDCITSHEKWDSRYSVLIWCSWFHNLSDLAKDLKKIEKRLEK
Ga0256369_103508	Ga0256369_1035081	F077781	ILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT
Ga0256369_104891	Ga0256369_1048913	F017294	NLKMTTRQMHLDKGPTGMASSTACGRNILRTPLSASWAEFKAEPVAYRCIKCNTSKQFEVNTRMDAKKETK