3300028117: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0h (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028117
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133460 | Gp0293483 | Ga0255290
• Sample Name: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0h (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9355514
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004323	Metagenome / Metatranscriptome	443	Y
F013303	Metagenome / Metatranscriptome	272	Y
F049019	Metagenome / Metatranscriptome	147	N
F051728	Metagenome / Metatranscriptome	143	Y
F089936	Metagenome / Metatranscriptome	108	Y
F102614	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255290_100743	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1203
Ga0255290_100816	Not Available	1170
Ga0255290_102070	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	790
Ga0255290_102573	Not Available	719
Ga0255290_102930	Not Available	677
Ga0255290_103583	Not Available	621
Ga0255290_105158	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255290_100743	Ga0255290_1007431	F013303	RVDAVESETAIKKSSDLGGSQEVTIKKSKWNGTFLGSVSELIK
Ga0255290_100816	Ga0255290_1008162	F049019	MRTSRKLTHVLFAVFTLAIMSMAALAADPGTSLPASSQASDQKQGSLLIYSHYGSVTSNVSANDTRINITNTHVTSSVVVHFFFVSQACNVADFKTELTQSQTYSFLVSDFDPDTVGYIMAVAEAEDGLPIAMNFLIGDLFVKSSTGPFSANLGAIAFAALWDGTNNGNNPNESGFWRIPGGDATTPSVNITFGSAGNYNALPRTLAVDNIPSFAGGDRALLILLTPVQSFVTGGGAVGTLFGLLFDDAEQSQSFQISGGSCQSTNIISDSYPRTAPRFTTVV
Ga0255290_102070	Ga0255290_1020701	F004323	MPLAGLRRLEGRATPAVANHSPVTRDYPSRALNDVFQAA
Ga0255290_102573	Ga0255290_1025731	F089936	KAYFMKKALIGMAVGAMALGASVVPASAGYLGSSDDLTLWDGIAGTDGGSTDAPQGPEALCNDGQDDIFEALVLTGGWASRLDTDGNGKPRYTVFQPYDLILNGLLGALGLEISDLNSQPAVVQGILADHIANGSFDENELEDTDLTRITMRSGFVATLTESEYDVMFPPAATFGERSIYENVYIEGVKIEDGDQYANGWLYCIGGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLPDT
Ga0255290_102930	Ga0255290_1029301	F102614	ISRVSIAKLQAALMLVAGLAFTSSPISSAVPPTTTGGSIVTSQNACVWWYEDFPTSISLSAGAGVKYEGLDLELTDTDETSIKLYISGNSVEGVPPAGDYESNTECTWYRTALIQGIEVLVDVDGTAVSSTDAGLAFDYTDLLNGDLPTALEGLNITNTLDVTCDGYWSSTAEIQLNTTSVGANVATAGASNPPKTKLADADSDRCAVELDYSVVVPGDKLPESP
Ga0255290_103583	Ga0255290_1035831	F089936	DETETLWDGIAGTDGGSTDVAQSPASALCNDGQDDIFEAMVLTGGWAERLDTDGNGKPRYTVFQPYDVILNGLLGALGLEISDLNSQPAVVQGVLADHIANGSFDENELEDADLTRITMRSGFVATLSNSEYDIPGALLAGTFGERSIYDNVYIEGSKIQNGSPYSNGWLYCIAGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLP
Ga0255290_105158	Ga0255290_1051581	F051728	KVKGAIKKIYSAMQKMPKVALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPTRRTKDATQRILGGGSKIKGAMQSLINGLKNIPRKSLKKWRDYVQAVKDKKLYDGARSAKLLVSLERLQRRTLKEAHERVKGLIFASPAVKAVIKRMDGLLKRKPKQAFDKWRKYVQAVNN