3300028116: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8h (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028116
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133460 | Gp0293484 | Ga0255291
• Sample Name: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8h (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5165638
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004323	Metagenome / Metatranscriptome	443	Y
F042867	Metagenome / Metatranscriptome	157	Y
F089936	Metagenome / Metatranscriptome	108	Y
F099393	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0255291_100985	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	808
Ga0255291_101150	Not Available	751
Ga0255291_101155	Not Available	749
Ga0255291_101476	Not Available	677

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255291_100985	Ga0255291_1009851	F004323	MPLAGLRRLEGRATPAVADLSPVTRDYPSRALSGVFQAAALRLF
Ga0255291_101150	Ga0255291_1011501	F089936	NRKAYFMKKALIGMAVGAMALGASVVPASAGYLGSSDDLTLWDGIAGTDGGSTDAPQGPEALCNDGQDDIFEALVLTGGWASRLDTDGNGKPRYTVFQPYDLILNGLLGALGLEISDLNSQPAVVQGILADHIANGSFDENELEDTDLTRITMRSGFVATLTESEYDVMFPPAATFGERDMYENVYIEGVKIEDGGQYANGWLYCIGGIIDSTPQVSHEGLNSEDTPNDGTPGGTNSLPDTL
Ga0255291_101155	Ga0255291_1011551	F099393	QRERETLMLVERGMPKRRFFPHGETQAPDSACGQVTRSGLVASRVRKVVFFSVCLPALLIALGAGDSLSLAYGQSESNAAVPTAVRATESGLSDQNRPTRDRSEPTVTGAAMHVALFVPR
Ga0255291_101476	Ga0255291_1014762	F042867	DVAPRQVVTPLAVVHTGVACAAVGIDTTVIESSDETATSVKERLNLKVLMSYLVILSLALPDV