3300028107: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0938-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028107
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296236 | Ga0256787
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0938-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197275252
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003289	Metagenome / Metatranscriptome	495	Y
F005470	Metagenome / Metatranscriptome	399	Y
F018726	Metagenome / Metatranscriptome	233	Y
F047414	Metagenome / Metatranscriptome	149	Y
F071833	Metagenome / Metatranscriptome	121	Y
F096377	Metagenome / Metatranscriptome	104	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256787_1051110	Not Available	937
Ga0256787_1063575	Not Available	802
Ga0256787_1080836	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	674
Ga0256787_1087676	Not Available	636
Ga0256787_1091262	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	619
Ga0256787_1093685	Not Available	607
Ga0256787_1117359	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256787_1051110	Ga0256787_10511101	F003289	EVALQTNFGVGFNNTQSDVLIHLTQXQYWWXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISWCVNIITNSSFILKMIEXQAETGLLTIRIRGKQXYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQNLTNYEFLKKF
Ga0256787_1063575	Ga0256787_10635752	F096377	DSKHATNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTMDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256787_1080836	Ga0256787_10808362	F018726	LMLVDPVTVAAASPTPSLVLAVVRSDGYGSERVDTGANGYSVITNHTKNKGGGSRHYIQMTKSVNAVDPYSGLTKKQIASVSFTISRPSFGFTDADIIALAKALTDYRDDSEVTTARLIQFQS
Ga0256787_1087676	Ga0256787_10876761	F047414	RMHRDSLMLSPLFSSNTHNGGFFSGFTPRYFSNVPHMQDTNKTFGPDDFLLRPSPTHMDIDVNARFEKAVENMKMELRNNPTQHLGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF
Ga0256787_1091262	Ga0256787_10912621	F098404	FPHTAMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHVGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK
Ga0256787_1093685	Ga0256787_10936851	F005470	VEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256787_1117359	Ga0256787_11173591	F071833	KLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL