3300028042: Mussel associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Mussels

Overview

Basic Information

• IMG/M Taxon OID: 3300028042
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046784 | Gp0296314 | Ga0256844
• Sample Name: Mussel associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Mussels
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 626608301
• Sequencing Scaffolds: 3
• Novel Protein Genes: 8
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean
• Type: Host-Associated
• Taxonomy: Host-Associated → Mollusca → Shell → Unclassified → Unclassified → Mussel Surface → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Pacific Ocean: East Pacific Rise
• Coordinates
  • Lat. (^o): 9.8441
  • Long. (^o): -104.2967
  • Alt. (m): N/A
  • Depth (m): 2503

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037755	Metagenome / Metatranscriptome	167	Y
F055744	Metagenome / Metatranscriptome	138	Y
F059475	Metagenome	134	Y
F079616	Metagenome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256844_10000597	Not Available	13829
Ga0256844_10066795	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1223
Ga0256844_10255625	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256844_10000597	Ga0256844_100005973	F055744	MTNYGNGFNWTELYHMPIHWRRFYFNKLLQSKKKEKEEYDKSNNNGSASRPPLRVKK
Ga0256844_10066795	Ga0256844_100667951	F037755	MAHDVSEYLQFVARAKVPDTKVMIYMAIVIFSFFFPFSYMYTKYHFVNCLSHRFEVYAVKNGGYKKFREKMFKTHKIPGNWHGNYT
Ga0256844_10080016	Ga0256844_100800161	F059475	MDNPEILTTYGTQNKDEEKQNKNTTQYVLDTIMRKQPQIT
Ga0256844_10157276	Ga0256844_101572761	F059475	TKDNPKKLATQEEEKQNKNTTQYVSDTTIHKQTQIT
Ga0256844_10217196	Ga0256844_102171961	F059475	MDDPEKLETWGTHDEYKQNKNTTQCAMDTTMRKQTQ
Ga0256844_10229369	Ga0256844_102293691	F059475	MDNPEKLAVYGTQDKEKQSKNTTQYVLDTTICKQTQITLIKVRE
Ga0256844_10255625	Ga0256844_102556251	F079616	MENTFEIGEIVVCVNARRNWYKLGGLKRDEMYTVIGFNPYDDGLILKEVKSPGSGCHAFAAERFRKVDYNFAENIIEELQSQKEFQITKS
Ga0256844_10319782	Ga0256844_103197821	F059475	MENPEKLATFGTQDEEKQNKNTTQCVLDITIHKHTQIT