3300028034: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_2017_08_16

Overview

Basic Information

• IMG/M Taxon OID: 3300028034
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0290891 | Ga0247721
• Sample Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_2017_08_16
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40946510
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → gas well → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Alt. (m): N/A
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087432	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247721_100309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halanaerobium	17389
Ga0247721_109831	Not Available	654
Ga0247721_110815	Not Available	586

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247721_100309	Ga0247721_10030916	F087432	MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFKEIIFSAEQDARLQEISELSIPQGFQAQVREYVENGNFPDGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI
Ga0247721_109831	Ga0247721_1098313	F087432	VINLIIYENGEYTPCTYRVTLQNRGVEETHYANFRTYWEDMVAKHDHLTNLNFEEIIFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI
Ga0247721_110815	Ga0247721_1108152	F087432	LIIYENGEYTPCTYRVTLQNKGVEETHYANFRTYWEDMVAKHDHLTNLNFTEITMTAEQQSRFEEIKNENIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI