3300027470: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027470
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091529 | Ga0207535
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14986323
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014539	Metagenome / Metatranscriptome	262	Y
F015807	Metagenome / Metatranscriptome	252	Y
F020630	Metagenome / Metatranscriptome	223	Y
F036825	Metagenome / Metatranscriptome	169	Y
F059436	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207535_100068	Not Available	1044
Ga0207535_100444	All Organisms → cellular organisms → Bacteria	678
Ga0207535_100830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588
Ga0207535_101170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207535_100068	Ga0207535_1000682	F059436	MNRSAEDGEWSSPHYGGEGTWVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLEPPMVGADISASEGPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGSKRLTGGGRPRAVWQRQRATRG
Ga0207535_100068	Ga0207535_1000683	F015807	SGAPDRYPKVGVMPHRPEGMEGMERLVRHDGESRDTDRPTWSHHRRHSGGQGARREAGSERLEENHRVVINGSDPER
Ga0207535_100444	Ga0207535_1004441	F036825	FIQVKSGYVDTGASAHQSNPVETTVKEANAKKLKKKKKLGIL
Ga0207535_100830	Ga0207535_1008302	F020630	VMEQVVDLATRRSGSIAVALVWDRSDQTLRVFAYDGLTGEEILVPVSGDEAAEVYRHPFAYAARAIKSSSKKS
Ga0207535_101170	Ga0207535_1011701	F014539	MKTFLRLAVLAVVGTTALALAGNALATQKLSIRQSTTSMTIKVSQAQTDPQPARISIYVPSGYTINASATAGSKIGTTTGTVFARDANIPLPLTGDVVAVPPTTNAPGCD