3300027449: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K5-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027449
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072125 | Ga0207531
• Sample Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K5-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3885450
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001436	Metagenome / Metatranscriptome	695	Y
F017236	Metagenome / Metatranscriptome	242	Y
F058266	Metagenome	135	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207531_100287	All Organisms → cellular organisms → Bacteria	642
Ga0207531_100402	Not Available	590
Ga0207531_100709	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207531_100287	Ga0207531_1002871	F001436	ELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRAGVGGRDFPSGVIKLWKQGAGRVN
Ga0207531_100402	Ga0207531_1004022	F058266	MNNDRLLVVFVVLYLIVIVALLFKDAPRPVAPEVKTPVAKVETAPIAKEDKPDAARPQADDGGKPGATPNCEKELRRTADLLRFFANRIQGGEDAQSVVADMRQQ
Ga0207531_100709	Ga0207531_1007091	F017236	MQHLPKQAVFLGRGLQARFDCCYQPLPDELNVLLWFLDGAERRGHIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIE