3300027434: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-11 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027434
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072062 | Ga0207565
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-11 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10846882
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005189	Metagenome / Metatranscriptome	409	Y
F007538	Metagenome / Metatranscriptome	349	Y
F016464	Metagenome / Metatranscriptome	247	Y
F020927	Metagenome / Metatranscriptome	221	N
F051112	Metagenome / Metatranscriptome	144	Y
F063987	Metagenome / Metatranscriptome	129	N
F097305	Metagenome / Metatranscriptome	104	N
F105318	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207565_100278	All Organisms → cellular organisms → Bacteria	835
Ga0207565_100681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648
Ga0207565_100845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606
Ga0207565_100943	Not Available	590
Ga0207565_101341	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	534
Ga0207565_101552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510
Ga0207565_101561	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207565_100205	Ga0207565_1002051	F105318	MEKFIHQQNLERYRKMLSEKTHEPQRQTIVRLLADEENRDDPLSKIDS
Ga0207565_100278	Ga0207565_1002781	F051112	IAAVAVAAVFVVSAAQAFTVGDSNGPVGGQGYIDFDKPGAAPDRMAPVNRFGNENGQTTMKQGNSTLQFGGQQSFGQRYNTDNIFNPYARDGR
Ga0207565_100681	Ga0207565_1006811	F005189	IVYPVFAQDVDPRCKDIFDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207565_100845	Ga0207565_1008452	F016464	VAGKKIEPVMRAFHTPDDSIKRQRDDHPKNAAPRGSTHAQFAAAYAESEQIDPNGNEHADVKGDPEPDARRHAGEGFMRKAVRQSQIARRADGTYTSQGRISPYQWMLN
Ga0207565_100943	Ga0207565_1009431	F097305	MENEKSSKDKKPDNRGQRLAAELRENLRRRKAQERGRKAPAAGESSKRPGLPPR
Ga0207565_101341	Ga0207565_1013411	F063987	MNFVSRTKSMAGPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVISVVHAERPDSTAGTSRAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYNLKVRPYFFKSKKGSLL
Ga0207565_101552	Ga0207565_1015521	F007538	TLYYRWKDEAEQGAKAALGGRSAAAAESEKDRRIRQLERTLGRKSLEIEILKNVVGE
Ga0207565_101561	Ga0207565_1015611	F020927	MWAAFVRQFAAYAITRRGKKLFALIGVLALCFGAALLIDMQFYVSASFAALLAGFAAVTYVVQHVKLKRAEHQRLLRKAEAAHQRALAAQARLERIDTAKSALR