3300027386: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by freeze-thaw cycling (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027386
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099546 | Gp0055084 | Ga0209021
• Sample Name: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by freeze-thaw cycling (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 359189761
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Gulf of Piran, Adriatic Sea
• Coordinates
  • Lat. (^o): 45.5099
  • Long. (^o): 13.56
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043272	Metagenome / Metatranscriptome	156	Y
F064730	Metagenome	128	Y
F087322	Metagenome	110	Y
F101825	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209021_1055877	Not Available	983
Ga0209021_1094649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	613
Ga0209021_1096082	All Organisms → cellular organisms → Bacteria	605

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209021_1055877	Ga0209021_10558772	F087322	LVLTPLLVLRITQAGTGEVCLVFLSRRIFLGDDLRAAIDFQAQKALFKPLDDMRNPLIF
Ga0209021_1087729	Ga0209021_10877294	F064730	SNWFWLLSGRIETLTVFGALSVLALFSYWSRLARALKA
Ga0209021_1094649	Ga0209021_10946491	F043272	RDGITRADIREYLWEHSTITFASIPDRRKGTKNDEELLRESPNVTPDGIVHLATRPDDIMVIVTGGKHRHCVLLPMWTGRNTLAVTKPIRTA
Ga0209021_1096082	Ga0209021_10960822	F101825	KRPAEYADYCKVGPTRVPFLNFPDNQIERAKKRAAHWMEMNQRYRPLVEAENGRSAA