3300027327: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027327
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099546 | Gp0055081 | Ga0209543
• Sample Name: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 328133411
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Gulf of Piran, Adriatic Sea
• Coordinates
  • Lat. (^o): 45.5099
  • Long. (^o): 13.56
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F011880	Metagenome / Metatranscriptome	286	Y
F045445	Metagenome / Metatranscriptome	153	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209543_1001060	All Organisms → cellular organisms → Bacteria → Proteobacteria	28262
Ga0209543_1001480	All Organisms → cellular organisms → Bacteria	20877
Ga0209543_1003423	All Organisms → cellular organisms → Bacteria	10037

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209543_1001060	Ga0209543_10010604	F004237	MIDYDIADMMDGVKNMIEASDIRPGDQVLLLADRRSDSASMEAISAGLKFMGAEPMSLITEPISRYGRVPQAVLDAMHACDVVIWVWPVFITFTPGHRALGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGGGKADGEVYLSCVQGVAGELPAPMKWVVKDSEVVEAEGGELAEECRQLFKNVPGSNRLVEIMFGYHPKASIQHGIADPMHWELISKMPWVGLGTDRKNPDFRHVDGSVMNARLYIDERLIVHEQGMLDRSLLHHPEVLEAASAYGDPYQVLAPVSHNAHGSGTLW
Ga0209543_1001480	Ga0209543_100148019	F011880	MATKEQIEAAEKRVYSQKDIGEFMTTWKDFPRPGLAAWSERKKAGLMNTARSTRYTPKFRPFDMLSVPNQSLVFLENENHRIGAESVVGVQDAFHRYVDCDMVYFQFCGNTTVETEFGVYEMTPGEVMLVPGGISHRSIGRNDSLRYFCLNREAVDYVLDEEKYTSHQSFVVKRHGGPNWSGLEAPNEEVRGRVTEKMHFWDDGPDDLTVVERDYDSLVGVSTLKPKQQESGIRKLRAFDHFTMVLGKAGGEAGLLALMESQSMRVRTYNMQDEQFAFHRALQSEEVRIQFRGDALDLSEFENVAVSPGEITIIPLGISHSVISVPPDSEDFLRLNFYSKLRWHVPIDPTRHVYNSTFTVETTVHKEADWWKTAANA
Ga0209543_1003423	Ga0209543_10034231	F045445	WPVLHLRNLARRGENDKAAEVIADIMTASQGKPVPGEGFKRPAEYADYCKVGPTRVPFLNFPDNQIERAKKRAAHWMEMNQRYRPLVEAENGRSAA