3300027269: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0745-MT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300027269
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114432 | Gp0296283 | Ga0256907
• Sample Name: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0745-MT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 246734235
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → research facility → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Iowa
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): -93.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F028371	Metagenome / Metatranscriptome	191	Y
F028375	Metagenome / Metatranscriptome	191	Y
F034478	Metagenome / Metatranscriptome	174	Y
F104141	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256907_1003535	Not Available	4409
Ga0256907_1059771	Not Available	1023
Ga0256907_1070849	Not Available	913
Ga0256907_1081051	Not Available	831
Ga0256907_1120458	All Organisms → cellular organisms → Eukaryota	620

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256907_1003535	Ga0256907_10035359	F028371	VVVDESFLVSASEDGLDVSGLLDFSSTFNDLLLGEFNTVVLEVPLSERSSIDLDDTALDQSVGSDEFVVGGVVDDTDDLGLSGDLFRSPGEVSGVESEGLEFVVSSSNSVSSDGLFTDLGESGRTTRFVLLLLLVDGH
Ga0256907_1059771	Ga0256907_10597711	F028375	EIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSR
Ga0256907_1070849	Ga0256907_10708491	F034478	HREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256907_1081051	Ga0256907_10810511	F005470	MSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256907_1120458	Ga0256907_11204581	F104141	LQQGDQEVDRHVDVLSEFFFGHGSNTDSSTHTEDLLQLESDGRLDFLKLFFNLFVFTDSDGELADLVEGVTHKLGDLLHQGFGGQKDIERLSPLLDQLLILVELLGTIDIDATNIDLLGLVTVDGSTDKTDLSVGGGDIGESDGSVESLILFGVVVSQTDLEFNSFGELSGLSTGKHISNCLLKSFGTDLTMEGVR