3300027092: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027092
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057304 | Ga0207945
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9156595
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.471116
  • Long. (^o): -72.17263
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012706	Metagenome / Metatranscriptome	278	Y
F016708	Metagenome / Metatranscriptome	245	N
F062944	Metagenome / Metatranscriptome	130	Y
F063041	Metagenome / Metatranscriptome	130	Y
F064990	Metagenome / Metatranscriptome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207945_100034	All Organisms → cellular organisms → Bacteria	2132
Ga0207945_100784	All Organisms → cellular organisms → Bacteria	618
Ga0207945_100859	All Organisms → cellular organisms → Bacteria	596
Ga0207945_101215	Not Available	527
Ga0207945_101232	Not Available	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207945_100034	Ga0207945_1000342	F016708	MSKQRREQSQDSIFVDNPFVDGFLEWMGSREGRQCIEVRDVLWGLLEDVELDAKQRQLIWPDAERLDLVQSIQRIQKLYPDFPGHEIEEVSLNWIDMGYNPENYSQAQLNELDGLTERWVADHLRN
Ga0207945_100784	Ga0207945_1007841	F012706	EGEAKGVYNATFYATITMLVKPDRTIDYEVRQIHTTSDGDTVLVYYKGKSIIESPTHNKFVGETTFQTSSKKLAWLNGMKARHEGEYNPVAGENDFRVYGKR
Ga0207945_100859	Ga0207945_1008591	F063041	MADRLEFEIDVELETGLITGHAGVPGLIEAFRQTGTAAVIDREIKLKSRKRGLSASEMVESLLAMWAAGGERAEDLDQFRQDKALALLLGHELPAAQTARDFLAQFHAEDLPLLQEGKSSVPAESVPLLSLAKANAELVLDMQCRRPVKTATLDVDAT
Ga0207945_101215	Ga0207945_1012151	F062944	LPLSRRFTPEHPPGENCSFGIDFSFIVPPGVGLASGTLAILTNSAAPTDASADWTVGPVTVRGRALYAMLTGGVAGTDYQLKFTAVDTAGNTWPRTALVLCADTS
Ga0207945_101232	Ga0207945_1012321	F064990	VISATLLLAALAATAAIAVVFLRSMGVTRDHPWIRQLASRPWRDGQDVLRVAMNHLPDVFVVAPSGALFAPNVVEIQLNPEDLASLCDRIELSVVTASVTEFYEEQIAKYRARFATPERAEVYLLADEWVPRGRYRLRQGHPATAAAQREFAYAVPRYSDADADLNEWDWREPGP