3300026996: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026996
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114663 | Gp0115676 | Ga0209894
• Sample Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84764034
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From The Columbia River, Washington, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → microcosm → sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008079	Metagenome / Metatranscriptome	339	Y
F008688	Metagenome / Metatranscriptome	329	N
F009204	Metagenome	321	Y
F014117	Metagenome / Metatranscriptome	265	Y
F015867	Metagenome / Metatranscriptome	251	N
F021301	Metagenome / Metatranscriptome	219	N
F028457	Metagenome / Metatranscriptome	191	Y
F029747	Metagenome / Metatranscriptome	187	Y
F031025	Metagenome / Metatranscriptome	183	N
F036108	Metagenome	170	Y
F039047	Metagenome / Metatranscriptome	164	N
F039985	Metagenome / Metatranscriptome	162	N
F058798	Metagenome / Metatranscriptome	134	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209894_1001179	All Organisms → Viruses → Predicted Viral	3724
Ga0209894_1005696	Not Available	1337
Ga0209894_1008167	Not Available	1067
Ga0209894_1009157	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	992
Ga0209894_1009799	Not Available	949
Ga0209894_1013139	Not Available	791
Ga0209894_1013249	Not Available	787
Ga0209894_1014362	Not Available	750
Ga0209894_1015462	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	717
Ga0209894_1021869	Not Available	580
Ga0209894_1027447	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209894_1001179	Ga0209894_10011792	F031025	VALSITQQPDSYHPGFNDTNFVITESSGGIYTSSNFKFIANVKVAATSVAKLKAPIYFGSVNKGVFNIGRIMESYVSNNWSFTDTSPSGCVDSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVTYAQAQYLATSASAKFLTNVRTRYIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGAATFFDVVLKLGGTAKSETYRINIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVERKQFQSNPYTLGTTYGYATSVRTRSNYHTKASQKIKLNSNWIDDTESAWLKDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKMFNLELDITLSFADKSQRL
Ga0209894_1005696	Ga0209894_10056965	F036108	MSLISQKDRDLAITAINHYVDFLSSEIDFYEKEELLEDTDYQEHKSQLPEVYALLNWIKLEYFKHEN
Ga0209894_1008167	Ga0209894_10081674	F009204	KMKTTIKYYTQNIYGVRREKFIDKNQERVFFQLTGRRTLDSVSRELIRDLSGSSIEFEQSLPPE
Ga0209894_1009157	Ga0209894_10091571	F028457	MAQETVSIAWCDNGMVDGKFMQGVTDVMLKSGINFTTTLRSQGNQIARQREKIIRYWYENNTSEWLLWVDSDVVISPEKFRLLWDNKDVKER
Ga0209894_1009799	Ga0209894_10097992	F021301	MNWKNISIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTSEFEKLSFLNDLPKAPIQFMFKLRGRYFKLAKTPNEMCGHHFIELQQVFNGDVIESLNKIVALLSVEVDFFGRNKKVVDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLKEEMKDMTEQLTNPQ
Ga0209894_1013139	Ga0209894_10131391	F014117	MKHLNNDTTAAIATAISGSSAVLHFANTWQPLFALVLALVGIVSGLFAIRYYAKKIDAIDGKGK
Ga0209894_1013249	Ga0209894_10132491	F039047	DLVALKVALGNSARRIDELMNDKPDWRNLYEFDKNSVEKAQKVLAKMIANS
Ga0209894_1013249	Ga0209894_10132492	F029747	MKYKLMIDTDTCTSFSTYPHTREGLDKALDRVDKARSRDGFKYANIVSDRDGEVFALDMSLAIN
Ga0209894_1014362	Ga0209894_10143621	F015867	YKVNYYDYDSDSYLEKDLYWMASYRGSFDFVPVGDGPKENWKGFSISGSGVNVFYNEKGLNITVDGFQEMKSGGYGKTTTFIQGAI
Ga0209894_1014362	Ga0209894_10143622	F008688	MSKVILACLLGLFITATVEPPKTKVYLIMSYRGNDLSIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE
Ga0209894_1015462	Ga0209894_10154621	F058798	MAEHKVAGGTMLLFIDPTGGDDYDTVVCLTSVSKADSVTVVDASSACGPDKSPGTLELSYSFEGQHLQDPAAGKISGTSLRELLRAKTTIGWKIAPEAPVTGDEIEEGTGYFSELSSTYAFDSVGTFTGTIQPYGTPTLTTQA
Ga0209894_1021869	Ga0209894_10218691	F008079	GAKISHKGNRITLDANRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPTPVVDEPAVESEEDGTEAK
Ga0209894_1027447	Ga0209894_10274471	F039985	VMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAGEANMGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGGDEFEPEPAPAPVRKAKPAPAPVMDDEEFF