Sample 3300026996

Overview

Basic Information
IMG/M Taxon OID	3300026996 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114663 \| Gp0115676 \| Ga0209894
Sample Name	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	84764034
Sequencing Scaffolds	11
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Groundwater Microbial Communities From The Columbia River, Washington, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → microcosm → sand
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Columbia River, Washington
Coordinates	Lat. (^o)	46.372	Long. (^o)	-119.272	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008079	Metagenome / Metatranscriptome	339	Y
F008688	Metagenome / Metatranscriptome	329	N
F009204	Metagenome	321	Y
F014117	Metagenome / Metatranscriptome	265	Y
F015867	Metagenome / Metatranscriptome	251	N
F021301	Metagenome / Metatranscriptome	219	N
F028457	Metagenome / Metatranscriptome	191	Y
F029747	Metagenome / Metatranscriptome	187	Y
F031025	Metagenome / Metatranscriptome	183	N
F036108	Metagenome	170	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209894_1001179	All Organisms → Viruses → Predicted Viral	3724	Open in IMG/M
Ga0209894_1005696	Not Available	1337	Open in IMG/M
Ga0209894_1008167	Not Available	1067	Open in IMG/M
Ga0209894_1009157	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	992	Open in IMG/M
Ga0209894_1009799	Not Available	949	Open in IMG/M
Ga0209894_1013139	Not Available	791	Open in IMG/M
Ga0209894_1013249	Not Available	787	Open in IMG/M
Ga0209894_1014362	Not Available	750	Open in IMG/M
Ga0209894_1015462	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	717	Open in IMG/M
Ga0209894_1021869	Not Available	580	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209894_1001179

All Organisms → Viruses → Predicted Viral

3724

Open in IMG/M

Ga0209894_1005696

Not Available

1337

Open in IMG/M

Ga0209894_1008167

Not Available

1067

Open in IMG/M

Ga0209894_1009157

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

992

Open in IMG/M

Ga0209894_1009799

Not Available

949

Open in IMG/M

Ga0209894_1013139

Not Available

791

Open in IMG/M

Ga0209894_1013249

Not Available

787

Open in IMG/M

Ga0209894_1014362

Not Available

750

Open in IMG/M

Ga0209894_1015462

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

717

Open in IMG/M

Ga0209894_1021869

Not Available

580

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209894_1001179	Ga0209894_10011792	F031025	VALSITQQPDSYHPGFNDTNFVITESSGGIYTSSNFKFIANVKVAATSVAKLKAPIYFGSVNKGVFNIGRIMESYVSNNWSFTDTSPSGCVDSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVTYAQAQYLATSASAKFLTNVRTRYIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGAATFFDVVLKLGGTAKSETYRINIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVERKQFQSNPYTLGTTYGYATSVRTRSNYHTKASQKIKLNSNWIDDTESAWLKDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKMFNLELDITLSFADKSQRL
Ga0209894_1005696	Ga0209894_10056965	F036108	MSLISQKDRDLAITAINHYVDFLSSEIDFYEKEELLEDTDYQEHKSQLPEVYALLNWIKLEYFKHEN
Ga0209894_1008167	Ga0209894_10081674	F009204	KMKTTIKYYTQNIYGVRREKFIDKNQERVFFQLTGRRTLDSVSRELIRDLSGSSIEFEQSLPPE
Ga0209894_1009157	Ga0209894_10091571	F028457	MAQETVSIAWCDNGMVDGKFMQGVTDVMLKSGINFTTTLRSQGNQIARQREKIIRYWYENNTSEWLLWVDSDVVISPEKFRLLWDNKDVKER
Ga0209894_1009799	Ga0209894_10097992	F021301	MNWKNISIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTSEFEKLSFLNDLPKAPIQFMFKLRGRYFKLAKTPNEMCGHHFIELQQVFNGDVIESLNKIVALLSVEVDFFGRNKKVVDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLKEEMKDMTEQLTNPQ
Ga0209894_1013139	Ga0209894_10131391	F014117	MKHLNNDTTAAIATAISGSSAVLHFANTWQPLFALVLALVGIVSGLFAIRYYAKKIDAIDGKGK
Ga0209894_1013249	Ga0209894_10132491	F039047	DLVALKVALGNSARRIDELMNDKPDWRNLYEFDKNSVEKAQKVLAKMIANS
Ga0209894_1013249	Ga0209894_10132492	F029747	MKYKLMIDTDTCTSFSTYPHTREGLDKALDRVDKARSRDGFKYANIVSDRDGEVFALDMSLAIN
Ga0209894_1014362	Ga0209894_10143621	F015867	YKVNYYDYDSDSYLEKDLYWMASYRGSFDFVPVGDGPKENWKGFSISGSGVNVFYNEKGLNITVDGFQEMKSGGYGKTTTFIQGAI
Ga0209894_1014362	Ga0209894_10143622	F008688	MSKVILACLLGLFITATVEPPKTKVYLIMSYRGNDLSIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE
Ga0209894_1015462	Ga0209894_10154621	F058798	MAEHKVAGGTMLLFIDPTGGDDYDTVVCLTSVSKADSVTVVDASSACGPDKSPGTLELSYSFEGQHLQDPAAGKISGTSLRELLRAKTTIGWKIAPEAPVTGDEIEEGTGYFSELSSTYAFDSVGTFTGTIQPYGTPTLTTQA
Ga0209894_1021869	Ga0209894_10218691	F008079	GAKISHKGNRITLDANRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPTPVVDEPAVESEEDGTEAK
Ga0209894_1027447	Ga0209894_10274471	F039985	VMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAGEANMGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGGDEFEPEPAPAPVRKAKPAPAPVMDDEEFF

Scaffold ID

Protein ID

Family

Sequence

Ga0209894_1001179

Ga0209894_10011792

F031025

VALSITQQPDSYHPGFNDTNFVITESSGGIYTSSNFKFIANVKVAATSVAKLKAPIYFGSVNKGVFNIGRIMESYVSNNWSFTDTSPSGCVDSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVTYAQAQYLATSASAKFLTNVRTRYIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGAATFFDVVLKLGGTAKSETYRINIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVERKQFQSNPYTLGTTYGYATSVRTRSNYHTKASQKIKLNSNWIDDTESAWLKDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKMFNLELDITLSFADKSQRL

Ga0209894_1005696

Ga0209894_10056965

F036108

MSLISQKDRDLAITAINHYVDFLSSEIDFYEKEELLEDTDYQEHKSQLPEVYALLNWIKLEYFKHEN

Ga0209894_1008167

Ga0209894_10081674

F009204

KMKTTIKYYTQNIYGVRREKFIDKNQERVFFQLTGRRTLDSVSRELIRDLSGSSIEFEQSLPPE

Ga0209894_1009157

Ga0209894_10091571

F028457

MAQETVSIAWCDNGMVDGKFMQGVTDVMLKSGINFTTTLRSQGNQIARQREKIIRYWYENNTSEWLLWVDSDVVISPEKFRLLWDNKDVKER

Ga0209894_1009799

Ga0209894_10097992

F021301

MNWKNISIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTSEFEKLSFLNDLPKAPIQFMFKLRGRYFKLAKTPNEMCGHHFIELQQVFNGDVIESLNKIVALLSVEVDFFGRNKKVVDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLKEEMKDMTEQLTNPQ

Ga0209894_1013139

Ga0209894_10131391

F014117

MKHLNNDTTAAIATAISGSSAVLHFANTWQPLFALVLALVGIVSGLFAIRYYAKKIDAIDGKGK

Ga0209894_1013249

Ga0209894_10132491

F039047

DLVALKVALGNSARRIDELMNDKPDWRNLYEFDKNSVEKAQKVLAKMIANS

Ga0209894_1013249

Ga0209894_10132492

F029747

MKYKLMIDTDTCTSFSTYPHTREGLDKALDRVDKARSRDGFKYANIVSDRDGEVFALDMSLAIN

Ga0209894_1014362

Ga0209894_10143621

F015867

YKVNYYDYDSDSYLEKDLYWMASYRGSFDFVPVGDGPKENWKGFSISGSGVNVFYNEKGLNITVDGFQEMKSGGYGKTTTFIQGAI

Ga0209894_1014362

Ga0209894_10143622

F008688

MSKVILACLLGLFITATVEPPKTKVYLIMSYRGNDLSIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE

Ga0209894_1015462

Ga0209894_10154621

F058798

MAEHKVAGGTMLLFIDPTGGDDYDTVVCLTSVSKADSVTVVDASSACGPDKSPGTLELSYSFEGQHLQDPAAGKISGTSLRELLRAKTTIGWKIAPEAPVTGDEIEEGTGYFSELSSTYAFDSVGTFTGTIQPYGTPTLTTQA

Ga0209894_1021869

Ga0209894_10218691

F008079

GAKISHKGNRITLDANRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPTPVVDEPAVESEEDGTEAK

Ga0209894_1027447

Ga0209894_10274471

F039985

VMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAGEANMGKLPVIEYVNSTAEKVGKGNTRVPNFKLVSWVARPAGMNADGGDEFEPEPAPAPVRKAKPAPAPVMDDEEFF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026996: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences