3300026930: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN336 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026930
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054324 | Ga0208340
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN336 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4884166
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013809	Metagenome / Metatranscriptome	268	Y
F016621	Metagenome	246	Y
F058962	Metagenome / Metatranscriptome	134	N
F093590	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208340_100122	All Organisms → cellular organisms → Bacteria	903
Ga0208340_100327	All Organisms → cellular organisms → Bacteria	620
Ga0208340_100568	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208340_100122	Ga0208340_1001221	F013809	VGETVRREKALDFSGCKPRPGTGSLHPVAIESAVEVTKLSELSMERVARRLGERAGHNVSER
Ga0208340_100327	Ga0208340_1003271	F058962	VPSYQYGTTVRNFDGSTTDTIVGNADFGSIDQTNRKITVRVSTTRLNTILTAAGHPRIVSGSTFCGLRGHTFELSELALEDFTRGGTEFKVK
Ga0208340_100327	Ga0208340_1003272	F093590	VILRSLPATALIVVGLFAVDRLKGYASSSAPSPSERPKLAPFEKRLAAAESVKVQTVILGIELDSTLESAHSKLDSLGKPSATSLDGADEAAGRTEDERKVSWQLAKTD
Ga0208340_100568	Ga0208340_1005681	F016621	VGVTDWNWLLPRDNQDYPWDCAACSTAWAMRTIGFAVSEQDVIAGLGPARISPTYGLLDASGAGLVSFLEEQGIHAANNPNASFADVAGAAGYQPMVIGGRAWGHWVAVRMSGLTAGRPDVAALALMNPAPGWMGIDQVLSEPDFEYLGSFSAVWFTSW