3300026914: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN94 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026914
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054527 | Ga0208705
• Sample Name: Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN94 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11918430
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Browns Valley, California, USA
• Coordinates
  • Lat. (^o): 39.23550963
  • Long. (^o): -121.2836963
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005849	Metagenome	388	Y
F018431	Metagenome	235	Y
F103766	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208705_100175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	998
Ga0208705_100225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	945
Ga0208705_100552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	724

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208705_100175	Ga0208705_1001751	F103766	ARLDGLRSRGILSPNDDMIVTWKRSWLPNLMRSELGHWMLDNNLMEYYSETMIKDLRDAAAPAAASATPQPSPQMGAH
Ga0208705_100225	Ga0208705_1002251	F005849	AGKPELLKLLTKDTNDIALIQTNAQAKLDNVKEDLKVLLEPKDPSAKVRTEAFMKDVAERIYIINAERDEVADVGPNGEKIVSETLRTVSELPTLGPPRLVTLRYDDIGGPEEDLRAKKSGVRDPIYAHRILVKMGEQKDFSFFDRFEQLLFDRIGVPPRNLSANVEQIRQSTFDRINSTIFEMNRFVVDRNPMVGLCWRNIADAVKAKLQNVPESQRQKETEDLVRQIYYVYIVLDQYAQLDELRSRGYVSGNDDKIIEWKRSMLPNLMRSDVGKWMLDSNLTEYYSEAMVRDLREAAGEKALSITPQADTR
Ga0208705_100552	Ga0208705_1005522	F018431	MKTILSALVAFALLTLVGPTIQAAEKSKDTKTPKSGESFSGSGTVIKNNVDICLVTGLRWAIHPENGEDVKVYPKSKQATEVLDRAAKNKSKVRVAGTW