Sample 3300026901

Overview

Basic Information
IMG/M Taxon OID	3300026901 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0055862 \| Ga0207487
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-10 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33010601
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.2958	Long. (^o)	-89.3799	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003573	Metagenome / Metatranscriptome	479	Y
F007548	Metagenome	349	Y
F013243	Metagenome / Metatranscriptome	273	Y
F015387	Metagenome / Metatranscriptome	255	Y
F018801	Metagenome / Metatranscriptome	233	Y
F023995	Metagenome / Metatranscriptome	208	Y
F030263	Metagenome / Metatranscriptome	186	Y
F035253	Metagenome / Metatranscriptome	172	N
F035439	Metagenome	172	Y
F062564	Metagenome	130	N
F069143	Metagenome / Metatranscriptome	124	Y
F077707	Metagenome	117	Y
F105284	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F003573

Metagenome / Metatranscriptome

479

F007548

Metagenome

349

F013243

Metagenome / Metatranscriptome

273

F015387

Metagenome / Metatranscriptome

255

F018801

Metagenome / Metatranscriptome

233

F023995

Metagenome / Metatranscriptome

208

F030263

Metagenome / Metatranscriptome

186

F035253

Metagenome / Metatranscriptome

172

F035439

Metagenome

172

F062564

Metagenome

130

F069143

Metagenome / Metatranscriptome

124

F077707

Metagenome

117

F105284

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207487_100018	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
Ga0207487_100834	Not Available	863	Open in IMG/M
Ga0207487_101244	Not Available	785	Open in IMG/M
Ga0207487_101584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	742	Open in IMG/M
Ga0207487_102344	Not Available	676	Open in IMG/M
Ga0207487_102564	Not Available	662	Open in IMG/M
Ga0207487_102724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
Ga0207487_103213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
Ga0207487_103832	All Organisms → cellular organisms → Bacteria → Terrabacteria group	598	Open in IMG/M
Ga0207487_104707	Not Available	566	Open in IMG/M
Ga0207487_106427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
Ga0207487_106515	Not Available	516	Open in IMG/M
Ga0207487_106817	Not Available	510	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207487_100018

All Organisms → cellular organisms → Bacteria

1749

Open in IMG/M

Ga0207487_100834

Not Available

863

Open in IMG/M

Ga0207487_101244

Not Available

785

Open in IMG/M

Ga0207487_101584

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

742

Open in IMG/M

Ga0207487_102344

Not Available

676

Open in IMG/M

Ga0207487_102564

Not Available

662

Open in IMG/M

Ga0207487_102724

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

653

Open in IMG/M

Ga0207487_103213

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium

625

Open in IMG/M

Ga0207487_103832

All Organisms → cellular organisms → Bacteria → Terrabacteria group

598

Open in IMG/M

Ga0207487_104707

Not Available

566

Open in IMG/M

Ga0207487_106427

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

518

Open in IMG/M

Ga0207487_106515

Not Available

516

Open in IMG/M

Ga0207487_106817

Not Available

510

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207487_100018	Ga0207487_1000181	F003573	MTESKGFVVPAGGGTHLDMMAPGRFAALKLLGHET
Ga0207487_100834	Ga0207487_1008342	F013243	LALLAVLLLGTAWPAGAPAGERHAGTVLAVDPQSRTLTVDEFGAGGERRALRVQVPREAVVLTSQRNQTGRDFKDAFRDNTISLADVQIGDFVVVELADSPDVARMVMVTLRRGAGF
Ga0207487_101244	Ga0207487_1012442	F007548	DHGPVSGADRAGPPGVTDAAASAGITAESKINDVLARHPATAPVFTQGRRLYVDQLHDLYARFPGLTVGDFARQNSLDLGAVLVQLNALAESEDAARRRDTRATDDPRVGHFSLTLGYTASYRPREDAAPDRVSVVSVQSARGPE
Ga0207487_101584	Ga0207487_1015842	F018801	GVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFALLYAGRLQIKRQRDG
Ga0207487_102344	Ga0207487_1023442	F015387	FIGLTVMGLALAYYSTSIATAGVAGIKLGSDNGDVLSVGSAALIAGMAMAAVFAYLAVTQIRGISRKA
Ga0207487_102564	Ga0207487_1025641	F105284	RFKLSQSDLSDNVDRNPAVPRTNRTQTAIGAQVTPRGWPILGLTYATGTLERTWLTGSGRPFAVERQSFDSVAGSVYYGTSWFDLTGSSTYSFSRTPGRTDRDVTSLYHDLSLTLRPVKVFAVTPSVSNGVDRSEWGGTSYESGSMSLLLTYTPTASRLSLWTLGAYTTAQASDGTVDGRTMSVSAGLSYGLGAILGVPSSVSLQAGYDRYVDGVYTDSS
Ga0207487_102724	Ga0207487_1027242	F077707	HYLLAETYSEMGRDESADEHYEALSNYYPNFPALKNYLHQISLMGLINLRA
Ga0207487_103213	Ga0207487_1032132	F023995	YWDGSRIWTYDFPNDQVQAIAIDPKQVAVTKTIAGLGKGPGHSLVVLPDKKKAAVNVAGDNLIVFLDLEHATVDGTLQTGAFP
Ga0207487_103832	Ga0207487_1038321	F035253	ALRQAASLRDAHELEVHDYRHVATTTLSGASTFAQGPAARRGRGRKRAEELNVI
Ga0207487_104707	Ga0207487_1047071	F030263	MRTSYDSSARRLSSWLMVVLGVVAYVGLLYGLTLLPLQFEVPLPFWGIAVVPPIVYGLLVPLLVRWPSPLRWLMGTALLSGLHVLLTFARAPISAFLDPTLAGRPLPWVVPPPLPELVGLILLLVPLRDLLRARPRSARERLAAGRSTASARARVASLSSRNPMLQGYPSPVVVSPP
Ga0207487_106427	Ga0207487_1064271	F069143	VNALEVARAALDTAGGEAEAVAHVEHSGLARFAGSEVHQPTLIEN
Ga0207487_106515	Ga0207487_1065151	F035439	VILGSAVDTWATVAVAIGTIGAVAYALFRDLVVTPRRRPKLELRFDRGGNDQVIVETDEGSQAAYARLRVANRGGRDTADDVVVMVTELRRLENSETRPIGLPLAWSGSRPPLTVASVHPGSERHVDLLHLSEAVPVQLDLNPQPTGGRGVLEAGAYEISVEVRARNADAI
Ga0207487_106817	Ga0207487_1068171	F062564	LERYNTPPPTGAGQAAYILARSRIAGRPYYHFGLVNTAPIDNNSWAYYYSTVAAPDGIFQRDFGTMLNVWRSWSLNQQMLRDRMQDAANKMRETGEILRSAARGQSEAFDRANKGFDYYIRGVEVLEHTPSGTRGNFDRDYADAVVRADPTKYRLVPPSQYRTTD

Scaffold ID

Protein ID

Family

Sequence

Ga0207487_100018

Ga0207487_1000181

F003573

MTESKGFVVPAGGGTHLDMMAPGRFAALKLLGHET

Ga0207487_100834

Ga0207487_1008342

F013243

LALLAVLLLGTAWPAGAPAGERHAGTVLAVDPQSRTLTVDEFGAGGERRALRVQVPREAVVLTSQRNQTGRDFKDAFRDNTISLADVQIGDFVVVELADSPDVARMVMVTLRRGAGF

Ga0207487_101244

Ga0207487_1012442

F007548

DHGPVSGADRAGPPGVTDAAASAGITAESKINDVLARHPATAPVFTQGRRLYVDQLHDLYARFPGLTVGDFARQNSLDLGAVLVQLNALAESEDAARRRDTRATDDPRVGHFSLTLGYTASYRPREDAAPDRVSVVSVQSARGPE

Ga0207487_101584

Ga0207487_1015842

F018801

GVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFALLYAGRLQIKRQRDG

Ga0207487_102344

Ga0207487_1023442

F015387

FIGLTVMGLALAYYSTSIATAGVAGIKLGSDNGDVLSVGSAALIAGMAMAAVFAYLAVTQIRGISRKA

Ga0207487_102564

Ga0207487_1025641

F105284

RFKLSQSDLSDNVDRNPAVPRTNRTQTAIGAQVTPRGWPILGLTYATGTLERTWLTGSGRPFAVERQSFDSVAGSVYYGTSWFDLTGSSTYSFSRTPGRTDRDVTSLYHDLSLTLRPVKVFAVTPSVSNGVDRSEWGGTSYESGSMSLLLTYTPTASRLSLWTLGAYTTAQASDGTVDGRTMSVSAGLSYGLGAILGVPSSVSLQAGYDRYVDGVYTDSS

Ga0207487_102724

Ga0207487_1027242

F077707

HYLLAETYSEMGRDESADEHYEALSNYYPNFPALKNYLHQISLMGLINLRA

Ga0207487_103213

Ga0207487_1032132

F023995

YWDGSRIWTYDFPNDQVQAIAIDPKQVAVTKTIAGLGKGPGHSLVVLPDKKKAAVNVAGDNLIVFLDLEHATVDGTLQTGAFP

Ga0207487_103832

Ga0207487_1038321

F035253

ALRQAASLRDAHELEVHDYRHVATTTLSGASTFAQGPAARRGRGRKRAEELNVI

Ga0207487_104707

Ga0207487_1047071

F030263

MRTSYDSSARRLSSWLMVVLGVVAYVGLLYGLTLLPLQFEVPLPFWGIAVVPPIVYGLLVPLLVRWPSPLRWLMGTALLSGLHVLLTFARAPISAFLDPTLAGRPLPWVVPPPLPELVGLILLLVPLRDLLRARPRSARERLAAGRSTASARARVASLSSRNPMLQGYPSPVVVSPP

Ga0207487_106427

Ga0207487_1064271

F069143

VNALEVARAALDTAGGEAEAVAHVEHSGLARFAGSEVHQPTLIEN

Ga0207487_106515

Ga0207487_1065151

F035439

VILGSAVDTWATVAVAIGTIGAVAYALFRDLVVTPRRRPKLELRFDRGGNDQVIVETDEGSQAAYARLRVANRGGRDTADDVVVMVTELRRLENSETRPIGLPLAWSGSRPPLTVASVHPGSERHVDLLHLSEAVPVQLDLNPQPTGGRGVLEAGAYEISVEVRARNADAI

Ga0207487_106817

Ga0207487_1068171

F062564

LERYNTPPPTGAGQAAYILARSRIAGRPYYHFGLVNTAPIDNNSWAYYYSTVAAPDGIFQRDFGTMLNVWRSWSLNQQMLRDRMQDAANKMRETGEILRSAARGQSEAFDRANKGFDYYIRGVEVLEHTPSGTRGNFDRDYADAVVRADPTKYRLVPPSQYRTTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026901: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-10 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences