3300026738: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-10 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026738
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072044 | Ga0207524
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-10 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21495309
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F002837	Metagenome / Metatranscriptome	527	Y
F003463	Metagenome / Metatranscriptome	485	Y
F013650	Metagenome / Metatranscriptome	269	Y
F072466	Metagenome	121	Y
F079256	Metagenome / Metatranscriptome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207524_100471	All Organisms → cellular organisms → Bacteria	847
Ga0207524_100638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	787
Ga0207524_101597	Not Available	636
Ga0207524_102094	Not Available	595
Ga0207524_102518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	566
Ga0207524_103922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207524_100471	Ga0207524_1004711	F003463	SILIRELSLGGGMGTKEDNLRVGSEANIDIAAGGRHIRGQVLLRRARVNEVGFEIVNTDLESRYRLRRILMDSLERSAGTREGDWDGQRKPQPM
Ga0207524_100638	Ga0207524_1006381	F001033	GHSLIARLTIAVFVFQMLGVTSVVHAERPDSTAGTSTAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGRAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFGT
Ga0207524_101597	Ga0207524_1015971	F072466	VSGTIDFKPAFQAEKVTGRFIRTVVHIEEEVRDVGPLKNKQIIARRLVPKQEEFTDGYMIYFPQGHSMFVAADDTEQLQRIGVLSRPHMVDMNSGEIVPETYSLSPKEIVERKQHN
Ga0207524_102094	Ga0207524_1020941	F079256	MRITMVLATAVVLGAIAAPLKAQDTAATKPGGLNKVAHNVSKTMKKAGRDTKAEVHRDASKTHQTLTKAGNDTKAQLKRTTGVTTHSPDANHKPGGVNKLARDVSHTSKTVGAKAKHSVKSASGEVHRDLTKAGKHAKE
Ga0207524_102518	Ga0207524_1025181	F013650	LHKFSPEASTYNWGELMSTYFSEKAASSYYVGSRLLDQTIANNPKIADATMPFELPKKLTEAYYLSIQGFHILEKSNVEGAKKYVTFFLKHPDLISWYHAVPLHIVPASRQMLNSTKYQDHPVIQKRMDVLKFLDSVWTKGVPLYYWDGRELNPYIGLYHNENLAGWMLAMRNIKGMKSEQVVDEAAA
Ga0207524_103922	Ga0207524_1039221	F002837	MPLEPCPTCGYALSTVDHHCRHCATSSRAIPSRPFDAKHLQQLIIMA