3300026727: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-10 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026727
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072040 | Ga0207545
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-10 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18987504
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. VF16	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002315	Metagenome / Metatranscriptome	572	Y
F003758	Metagenome / Metatranscriptome	470	Y
F023931	Metagenome	208	Y
F026602	Metagenome / Metatranscriptome	197	N
F063830	Metagenome	129	Y
F082881	Metagenome / Metatranscriptome	113	Y
F099265	Metagenome / Metatranscriptome	103	N
F103530	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207545_100344	Not Available	923
Ga0207545_100360	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	911
Ga0207545_100626	Not Available	793
Ga0207545_100863	All Organisms → cellular organisms → Bacteria → Proteobacteria	725
Ga0207545_102114	All Organisms → cellular organisms → Archaea	574
Ga0207545_102618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → unclassified Microvirga → Microvirga sp. VF16	543
Ga0207545_102887	Not Available	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207545_100344	Ga0207545_1003441	F103530	MPAPEDGKFERIDPPRYVAFRRVRGTSTLAVIASVEGRDRCGYQLGRWFSERTPHGVFRNVPVDADSYGIDESVAANLIDLIRNGQPLPPRIVRLMPEFPTN
Ga0207545_100360	Ga0207545_1003602	F099265	MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGELSPVEASKYLVNRKQDECRVSYDHNNVEYILRVM
Ga0207545_100626	Ga0207545_1006261	F063830	MRTALVTASVLGLALIGGTSARSDQSRSHADFQGYWMGVDPVDGGDARRSLILRSDGKYALAARDSMLTLCDSTDRGFASFDDGSVVSRTVMQSNSLIIECFNNGATVQLHLRFELVERGLMIETATLPDGSPVSTIVLHKVSTN
Ga0207545_100863	Ga0207545_1008631	F082881	QFERGRSRALAPGQDPRPKYWEHYLEFYRVLTQGGTDGLPHQFTEMFQRAYTRAREELRNRRRGE
Ga0207545_102114	Ga0207545_1021142	F026602	MEGINEEECNKIFNCKIISEDVLKYPDIVNPFTKNEDIAKTLVNNANDSKIMTEHTCQKLMDVDIVKKKDQKIGEQTPKYLVCLPXDTFALLT
Ga0207545_102456	Ga0207545_1024561	F023931	AQTATRLRIYQVLFAISIIAGLLAGLWCIFDPVGFAQLVFQIDPYPQTWPRIWGATLFGLQLAYIPGVRNPSFYRWPNWASIAIKFLMTIIFLTAGSSFYLLAAWELVWFVILLVAYYRLMLAGIHGDP
Ga0207545_102618	Ga0207545_1026182	F002315	MKRVAVLSMAMLTVAFAADKKTYRYNCKGGAFTVTAAVEASGRWSKAEPVVLQIDSEPPQTLIADPDVPDADSFTNKDYEFYALKTFITLTRKSHGVVVKTYNACWVE
Ga0207545_102887	Ga0207545_1028872	F003758	PGTDVAIGKKAVKHISFDPRLSPNVLRAFENAEDEILMNTLKGAPRLDVPSLFRPQFMAEVQKEHPEYFADLPPLK