3300026713: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026713
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091537 | Ga0207629
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14624499
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3
All Organisms → cellular organisms → Bacteria	4
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F006477	Metagenome / Metatranscriptome	372	Y
F007896	Metagenome / Metatranscriptome	343	Y
F017759	Metagenome	239	N
F018629	Metagenome / Metatranscriptome	234	Y
F022031	Metagenome / Metatranscriptome	216	Y
F042206	Metagenome / Metatranscriptome	158	Y
F046551	Metagenome / Metatranscriptome	151	Y
F049092	Metagenome	147	N
F050719	Metagenome / Metatranscriptome	145	Y
F063553	Metagenome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207629_100602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	704
Ga0207629_100641	All Organisms → cellular organisms → Bacteria	695
Ga0207629_100729	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	674
Ga0207629_100760	Not Available	667
Ga0207629_100816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656
Ga0207629_101290	All Organisms → cellular organisms → Bacteria	587
Ga0207629_101546	All Organisms → cellular organisms → Bacteria	564
Ga0207629_101575	Not Available	561
Ga0207629_101590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560
Ga0207629_102080	All Organisms → cellular organisms → Bacteria	519
Ga0207629_102254	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207629_100602	Ga0207629_1006021	F022031	MTNFVSTVCLVLMCSAIFLDSSTLTAAQSSSLDGTYVLDQTESDNINDVIEDAVGKLNFVTRDIARERLKKL
Ga0207629_100641	Ga0207629_1006412	F018629	KQGMAGSIPESQAVSEERQKKDAMAELICSVSGWVAEFKGRRRPDPRITFQTLFKEA
Ga0207629_100729	Ga0207629_1007291	F042206	MQIAAQPAFNQSGLALHATAGKIAFAGKMHITAGANASTEPAGDFVIAQINVRAAGWTDCRRRCARNLLFPFTFETLDNATGLPLPKILEFPKDR
Ga0207629_100760	Ga0207629_1007601	F049092	MKFIEPAFETGGDLWRTSSNVPDADARALNEKLARQSAELNRRLTEILELYNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAA
Ga0207629_100816	Ga0207629_1008161	F046551	MQSPPINQAEIDARISSHIDELLELWWAEQGPSKPKDLELIALAMPFPRGQAIRALDLCCGPGDVGRAIRQIYPKAQIDCIDRDPFLTSI
Ga0207629_101290	Ga0207629_1012901	F063553	GEMLNGPLALILRFFGLVPLAAISFLIGALISRVGWIAVGKVSGSDPESVFAAERY
Ga0207629_101546	Ga0207629_1015461	F000268	EIDDNLTSNSSWMLMRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSRVTFGFDKNGRMTFPDSFDQ
Ga0207629_101575	Ga0207629_1015751	F050719	MLDPVREECDLHIRAAGIFVMQLELLEIQRLVTLSHNEGPIVAEEPIFATAQTR
Ga0207629_101590	Ga0207629_1015901	F006477	MTVLIPLIVVVASGLAFVAYKHPNAYRVMFMFAVPVLVMGGLIVLAIKIGDLNGSIKSIYHELPNIQKYALSDQLPYQIRRLYDVGQFLKVFLIYYIFGFAYLVFLFVLGALLDLAKDRHDIPT
Ga0207629_102080	Ga0207629_1020801	F007896	SRAGTYLRQNASAFHSDLARRQSYARGFTLRFVERANYLSPKMTTRRAAAVFCFANYESTTISKKALCELQDCEAQERIARDLQKPTAQATPGLNGFNFVTL
Ga0207629_102254	Ga0207629_1022541	F017759	MLSGAVIVHGCKPLLLFGVVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRAMIPPAWS